| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,837,273 – 16,837,372 |
| Length | 99 |
| Max. P | 0.846805 |
| Location | 16,837,273 – 16,837,372 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 82.94 |
| Mean single sequence MFE | -26.11 |
| Consensus MFE | -23.19 |
| Energy contribution | -22.53 |
| Covariance contribution | -0.67 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.89 |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.846805 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16837273 99 + 20766785 U----GCC---AGUCAGCACCAAAAAUCAGUAAUCAUGCGAUUGCUAAACUAGCAUGGCGACUACGCUUGGGUGCUAAAAGUAA-AUUCGCUAUAAUGCCGCAUACU (----((.---....((((((.......(((((((....))))))).......((.((((....))))))))))))........-....((......)).))).... ( -24.10) >DroVir_CAF1 5948 102 + 1 CUUGCGCU---AGCCAGCACCAA-AAUCAGUAACCAAGCGAUUGCUAAACUAGCUUGGCGACUACGCUUGGGUGCUAAAAUUAAAACACGCUAUAAUGCCGCAUG-U ..((((((---....))).....-....((((.(((((((.(((((((......)))))))...))))))).)))).............((......)).)))..-. ( -27.10) >DroGri_CAF1 6914 97 + 1 ------UG---CGCAAGCACCAA-AAUCAGUAACCAAGCGACUGCUAAACUAGCUUGGCGACUACGCUUGGGUGCUAACAUUAAUUACCGCUAUAAUGCCGUAUAUU ------((---(....)))....-....((((.(((((((..((((((......))))))....))))))).)))).........(((.((......)).))).... ( -27.90) >DroMoj_CAF1 6772 99 + 1 C--GCGUG---CGCCAGCACCAA-AAUCAGUAACCAAGCGACUGCUAAACUAGCUUGGCGACUACGCUUGGGUGCUAAAAUUAA-AUACGCUAUGAUGCCGCAUU-U .--(((((---(....))))...-....((((.(((((((..((((((......))))))....))))))).))))........-....((......)).))...-. ( -28.30) >DroAna_CAF1 5560 101 + 1 C----GCCGGAAACCAGCACCAA-AAUCAGUAACCAUGCGACUGCUAAACUAGCAUGGCGACUACGCUUGGGUGCUGACAGUAA-CUUCGCUAUAAUGCCGCAUACU .----((.((....(((((((..-....(((..((((((.............))))))..))).......)))))))..(((..-....)))......))))..... ( -28.64) >DroPer_CAF1 6882 98 + 1 U----GCC---AAAAAGCACCAAAAAUCAGUAACCAUGCGACUGCUA-ACUAGCACGGGGACUACGCUUGGGUGCUAAAAUUAA-UAUCGUUAUAAUGCCGCAUACU (----((.---....((((((.......(((..((.(((........-....))).))..))).......))))))........-....((......)).))).... ( -20.64) >consensus C____GCC___AGCCAGCACCAA_AAUCAGUAACCAAGCGACUGCUAAACUAGCAUGGCGACUACGCUUGGGUGCUAAAAUUAA_AUUCGCUAUAAUGCCGCAUACU .....((........((((((.......(((..((((((.............))))))..))).......)))))).............((......)).))..... (-23.19 = -22.53 + -0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:25 2006