| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,825,640 – 16,825,735 |
| Length | 95 |
| Max. P | 0.628779 |
| Location | 16,825,640 – 16,825,735 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 78.15 |
| Mean single sequence MFE | -29.03 |
| Consensus MFE | -20.02 |
| Energy contribution | -19.80 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.628779 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16825640 95 + 20766785 G------AAUAUUCAACCAUUUAUG--------UAGGCUAUAUGCGGUGCUGGGGCCGUGAUACCUUCAUCGCUCUGCGUGGCUCCAUGUUCCUCACUGGCCGUUACAA .------................((--------(((((((..((.((.(((((((((((((.....))))(((...))).))))))).)).)).)).)))))..)))). ( -28.70) >DroPse_CAF1 24881 104 + 1 GAUCUCACAU-CCUCUCGCUU----UAUCUCCACAGGUUACAUGCGCUGCUGGGGCCGUGAUACCUUCAUCGCCCUGCGUGGAUCGAUGUUCCUGACUGGGCGUUUCAA ((((.(((..-.....(((..----.((((....)))).....)))..((.(((((.((((.....)))).))))))))))))))(((((((......))))))).... ( -31.00) >DroSec_CAF1 21301 95 + 1 G------AAUAUCCAACCAUUUAUU--------UAGGCUAUAUGCGGUGCUGGGGCCGUGAUACCUUCAUCGCUCUGCGUGGCUCCAUGUUCCUCACUGGCCGUUACAA .------..................--------..(((((..((.((.(((((((((((((.....))))(((...))).))))))).)).)).)).)))))....... ( -27.70) >DroSim_CAF1 19295 94 + 1 G------AAUAUCCAACCAUUUAU---------UAGGCUAUAUGCGGUGCUGGGGCCGUGAUACCUUCAUCGCUCUGCGUGGCUCCAUGUUCCUCACUGGCCGUUACAA .------.................---------..(((((..((.((.(((((((((((((.....))))(((...))).))))))).)).)).)).)))))....... ( -27.70) >DroAna_CAF1 21484 98 + 1 GCUGUCUAAUUCCCUUCCCUU---U--------CAGGCUACAUGCGCUGCUGGGGCCGUGACACCUUCAUCGCCCUGCGUGGCUCCAUGUUCCUAACUGGUCGCUACAA .................((..---.--------.(((..(((((.((..(((((((.((((.....)))).)))))).)..))..))))).)))....))......... ( -28.10) >DroPer_CAF1 21396 104 + 1 GAUCUCACAU-CCUCUCGCUU----UAUCUCCACAGGUUACAUGCGCUGCUGGGGCCGUGAUACCUUCAUCGCCCUGCGUGGAUCGAUGUUCCUGACUGGGCGUUUCAA ((((.(((..-.....(((..----.((((....)))).....)))..((.(((((.((((.....)))).))))))))))))))(((((((......))))))).... ( -31.00) >consensus G______AAUACCCAACCAUU____________CAGGCUACAUGCGCUGCUGGGGCCGUGAUACCUUCAUCGCCCUGCGUGGCUCCAUGUUCCUCACUGGCCGUUACAA ...........................................(((((...(((((.((((.....)))).)))))(((((....))))).........)))))..... (-20.02 = -19.80 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:14 2006