| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,814,872 – 16,814,966 |
| Length | 94 |
| Max. P | 0.852722 |
| Location | 16,814,872 – 16,814,966 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 79.45 |
| Mean single sequence MFE | -20.29 |
| Consensus MFE | -12.04 |
| Energy contribution | -11.68 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.852722 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16814872 94 + 20766785 CAUCUUCUUGCCCUUCACCAUUAAUCUGGAUCCCUACUUAAGAAAGGUCUUAAAGGGUGAGUUAUAAAA--AAAAAUAAAAGUCUG-------GCGCAAGCUA ......((..(((((..(((......))).........(((((....))))))))))..))........--.............((-------((....)))) ( -21.10) >DroSec_CAF1 8971 93 + 1 CAUCUUCUUGCCCUUUACCAUUAAUCUUGAUCCCUACUUAAGAAAGGUCUUAAAGGGUGAGUUAUAAGA---AAAAUAAAACUCUA-------GCGCAAACUA ..((((((..(((((((..(((..((((((.......))))))..)))..)))))))..))....))))---..............-------.......... ( -18.40) >DroSim_CAF1 8683 93 + 1 CAUCUUCUUGCCCUUCACCAUUAAUCUGGAUCCCUACUUAAGAAAGGUCUUAAAGGGUGAGUUAUAAUA---AAAAUAAAACUCUG-------GCGCAAACUA .......((((((....(((......)))..((((..((((((....)))))))))).(((((.((...---....)).))))).)-------).)))).... ( -18.40) >DroEre_CAF1 8929 96 + 1 AAUCUUCUUGCCCUUCACAAUUAAUCUGGAUCCUUACUUAAGAAAGGUCUUGAAGGGUGCGUUUAAAAAAACAAAAUAAAACUCGG-------GCGCAAUCUA .........((((((((..........(((.((((.(....).)))))))))))))))(((((..(................)..)-------))))...... ( -19.79) >DroYak_CAF1 8900 96 + 1 CAUCUUCUUGCCCUUCACCAUUAAUCUGGAUCCUUACUUAAGAAAGGUCUUAAAGGGUGAGUUUACAAACAAUAAAUAACAUUAAG-------GCGCAAUCUA .......((((((((((((........(((.((((.(....).))))))).....)))))(((....)))..............))-------).)))).... ( -18.02) >DroAna_CAF1 9487 93 + 1 CAUAUUCUUGCCCUUCACUAUUAACCUGGAUCCCUACCUGAGGAAGGUUUUGAAGGGUAAGA----------GCAUCCAAAGUGUGAUCCUUUCCAAAAACUA ....(((((((((((((.....(((((...((((.....).)))))))).))))))))))))----------).......(((.((........))...))). ( -26.00) >consensus CAUCUUCUUGCCCUUCACCAUUAAUCUGGAUCCCUACUUAAGAAAGGUCUUAAAGGGUGAGUUAUAAAA___AAAAUAAAACUCUG_______GCGCAAACUA ......(((((((((..(((......))).........(((((....)))))))))))))).......................................... (-12.04 = -11.68 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:09 2006