Locus 5164

Sequence ID 2R_DroMel_CAF1
Location 16,807,333 – 16,807,426
Length 93
Max. P 0.740396
window8255

overview

Window 5

Location 16,807,333 – 16,807,426
Length 93
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 97.13
Mean single sequence MFE -20.72
Consensus MFE -20.17
Energy contribution -20.20
Covariance contribution 0.03
Combinations/Pair 1.04
Mean z-score -0.82
Structure conservation index 0.97
SVM decision value 0.45
SVM RNA-class probability 0.740396
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16807333 93 - 20766785
UCGUUUAUCUAGGACGUGGCUUAGUUAGUAUAUCAUUAUUUACGUGACUUAAAUCGCUACGAAAGCUCUGCGCUCUACGGCAGUUUAGCUUUA
..............((((((..((((((((..........))).)))))......))))))((((((((((........))))...)))))). ( -21.30)
>DroSec_CAF1 1465 93 - 1
UCGUUUAUCUAGGACGUGGCUUAGUUAGUAUAUCAUUAUUUACGUGACUUAAAUCGCUACGAAAGCUCUGCGCUCUACGGCAGUUUAGCUUUA
..............((((((..((((((((..........))).)))))......))))))((((((((((........))))...)))))). ( -21.30)
>DroSim_CAF1 1474 93 - 1
UCGUUUAUCUAGGACGUGGCUUAGUUAGUAUAUCAUUAUUUACGUGACUUAAAUCGCUACGAAAGCUCUGCGCUCUACGGCAGUUUAGCUUUA
..............((((((..((((((((..........))).)))))......))))))((((((((((........))))...)))))). ( -21.30)
>DroEre_CAF1 1461 93 - 1
UCGUUUAUCUAGGACGUGGCUUAGUUAGUAUAUAAUUAUUUACGUGACUUAAAUCGCUACGAAAGCUCUGCGCUCUACGGCAGUUUAGCUUUA
..............((((((..((((((((..........))).)))))......))))))((((((((((........))))...)))))). ( -21.30)
>DroYak_CAF1 1437 93 - 1
UCGUUUAUCUAGGACGUGGCUUAGUUAGUAUAUCAUUAUUUACGUGACUUAAAUCGCUACGAAAGCUCUGCGCUCUACGGCAGUUUAGCUUUA
..............((((((..((((((((..........))).)))))......))))))((((((((((........))))...)))))). ( -21.30)
>DroAna_CAF1 1731 92 - 1
UCGCUUAUCUAGGACGUGGC-UAGUUAGUAUAUCAUUAUUUACGUGACUUAAAUCACUACGAAAGCUGUGCGCUUUAUGGCAGUUUGGCUUUA
..(((...((..(.((..((-(.((.((((......)))).))((((......))))......)))..)))(((....)))))...))).... ( -17.80)
>consensus
UCGUUUAUCUAGGACGUGGCUUAGUUAGUAUAUCAUUAUUUACGUGACUUAAAUCGCUACGAAAGCUCUGCGCUCUACGGCAGUUUAGCUUUA
..............((((((..((((((((..........))).)))))......))))))((((((..(((((....))).))..)))))). (-20.17 = -20.20 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:07 2006