| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,805,555 – 16,805,649 |
| Length | 94 |
| Max. P | 0.609506 |
| Location | 16,805,555 – 16,805,649 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 83.12 |
| Mean single sequence MFE | -24.58 |
| Consensus MFE | -18.26 |
| Energy contribution | -17.57 |
| Covariance contribution | -0.69 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.609506 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16805555 94 + 20766785 ---UUCUCUUUCUGCGCCAGCGGUUUUGCUUC------CAAUUCCAUUCAGUUUUCCAGCAGAGCGCGCCGCGUGCGCUCCUCUAAUCG--UAAUCGCUGUGUUU ---..........((((.(((((((.((((..------.((((......))))....))))((((((((...)))))))).........--.))))))))))).. ( -25.90) >DroSec_CAF1 3554 100 + 1 ---UUCUCUUUCUGCGCCAGCGAUUUUGCCUCCAAUUCCAAUUCCAUUUAGUUUUCCAGCAGAGCGCGCCGCGUGCGCUCCUCUAAUCG--UAAUCGCUGUGUUU ---..........((((.(((((((.((......................((......)).((((((((...)))))))).......))--.))))))))))).. ( -24.90) >DroSim_CAF1 3542 100 + 1 ---UUCUCUUUCUGCGCCAGCGAUUUUGCCUCCAAUUCCAAUUCCAUUUAGUUUUCCAGCAGAGCGCGCCGCGUGCGCUCCUCUAAUCG--UAAUCGCUGUGUUU ---..........((((.(((((((.((......................((......)).((((((((...)))))))).......))--.))))))))))).. ( -24.90) >DroEre_CAF1 3497 103 + 1 CUAUUCUCUUUCUGCGCCAGCGGUUUCGCUGCCAAUUCCAAUUCCAUUUAGUUUUCCAGCAGAGCGCGCCGCGUGCGCUUCUCUAAUCG--UAAUCGGUGUGCUU ..........((((((.(((((....))))).)......((((......)))).....)))))((((((((..((((.((....)).))--))..)))))))).. ( -29.10) >DroYak_CAF1 3604 103 + 1 CUGUUCUCUUUCUGCGCCACCGGUUUCGCUUCCAAUUCCAAUUCCAUUUAGUUUUCCAGCAGAGCGCGCCGCGUGCGCUCCUCUAAUCG--UAAUCGUUGUGCUU .............((((...(((((.((......................((......)).((((((((...)))))))).......))--.)))))..)))).. ( -22.10) >DroPer_CAF1 3783 87 + 1 UUCCUCUCUUUCUGCGCCAUCGGUU------------------ACAGUUAGUUUUCCAGCAGAGUGCGCCGCGUGCGCUCCACUCACCGACUAAUCGCCGCUUUU ....................((((.------------------...(((((((....((..((((((((...))))))))..))....))))))).))))..... ( -20.60) >consensus ___UUCUCUUUCUGCGCCAGCGGUUUUGCUUCCAAUUCCAAUUCCAUUUAGUUUUCCAGCAGAGCGCGCCGCGUGCGCUCCUCUAAUCG__UAAUCGCUGUGUUU .............((((...(((((.........................((......)).((((((((...))))))))............)))))..)))).. (-18.26 = -17.57 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:06 2006