Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 16,798,788 – 16,798,901 |
Length | 113 |
Max. P | 0.953137 |
Location | 16,798,788 – 16,798,901 |
---|---|
Length | 113 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.19 |
Mean single sequence MFE | -21.89 |
Consensus MFE | -15.46 |
Energy contribution | -15.69 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.10 |
Mean z-score | -1.80 |
Structure conservation index | 0.71 |
SVM decision value | 1.43 |
SVM RNA-class probability | 0.953137 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16798788 113 - 20766785 CUACACGCUAUACGAUCUACACAGCCUGCCUUAGAAUCCA----UACAUACAUAAUCCAUAUCUAUACAUCUGGGGCAUUCAAAAGAUCUGAUAGAGUGAUAAAUACC-AAAGUUUC--C ...(((.((((..(((((........(((((((((....(----((.(((.........))).)))...)))))))))......)))))..)))).))).........-........--. ( -20.84) >DroEre_CAF1 5454 101 - 1 CUACACUCUAUACGAUUUACACAGCCUGCCUUAGAGUCUACAUGU------------------UAUA-AUCUGGGGUAUUCAAAAGAUCUGAUAGAGUGAUAAAUACCCAAAGGGACAUA ...((((((((..(((((........(((((((((..........------------------....-.)))))))))......)))))..)))))))).......(((...)))..... ( -24.60) >DroYak_CAF1 5508 96 - 1 CUACACGCUAUACGACUUACACAGCCUGCCUUAGAGUCUA----U------------------UAUACAUCUGGGGUAUUCAAAAGAUGUAAUAGAGUGUUAAAUACCCAGAGGGAC--A ..((((.(((((((.(((........(((((((((((...----.------------------...)).))))))))).....))).))).)))).))))......(((...)))..--. ( -20.22) >consensus CUACACGCUAUACGAUUUACACAGCCUGCCUUAGAGUCUA____U__________________UAUACAUCUGGGGUAUUCAAAAGAUCUGAUAGAGUGAUAAAUACCCAAAGGGAC__A ...(((.((((..(((((........(((((((((..................................)))))))))......)))))..)))).)))..................... (-15.46 = -15.69 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:04 2006