Locus 516

Sequence ID 2R_DroMel_CAF1
Location 2,795,789 – 2,795,896
Length 107
Max. P 0.617161
window975

overview

Window 5

Location 2,795,789 – 2,795,896
Length 107
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 87.34
Mean single sequence MFE -21.43
Consensus MFE -16.85
Energy contribution -17.47
Covariance contribution 0.61
Combinations/Pair 1.11
Mean z-score -2.26
Structure conservation index 0.79
SVM decision value 0.17
SVM RNA-class probability 0.617161
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2795789 107 + 20766785
AAAUCGGUUACGCAACGGACGAGCUCCGAAAAAAGUGGCUUAUGAAAAAUCACAUGAGUCAUUUAACUGAAGAAGACUGAAGAAGGCGAGAGAAAUGAAAACUAAUU
...((((((......((((.....))))....((((((((((((........))))))))))))..........))))))........................... ( -22.80)
>DroSec_CAF1 2742 106 + 1
AAAUCGGUUACGCAACGGACGAGCUCCGAA-AAAGUGGCUUAUGAAAAAUCACAUGAGUCAUUUAACUGCAGAAGACUGAAGAAGGCGAAAGAAAUGAAAACUAAUU
...((((((..(((.((((.....))))..-.((((((((((((........))))))))))))...)))....))))))......(....)............... ( -25.40)
>DroSim_CAF1 2840 107 + 1
AAAUCGGUUACGCAACGGACGAGCUCCGAAAAAAGUGGCUUAUGAAAAAUCACAUGAGUCAUUUAACUGCAGAAGACUGAAGAAGGCGAAAGAAAUGAAAACUAAUU
...((((((..(((.((((.....))))....((((((((((((........))))))))))))...)))....))))))......(....)............... ( -25.40)
>DroEre_CAF1 2754 104 + 1
AAAUCGCUUACGCAACCGACAAACUCCGAAAAAAAUGGCUUAUGAAAAAUCGCAUGAGUCAUUUAACUGAAGAAGACCAA---AGGCGAAAGAAAUGAAAACUAAUU
...((((((.......((........))....((((((((((((........))))))))))))................---)))))).................. ( -19.90)
>DroYak_CAF1 2812 104 + 1
AAAUCGGUUACGCAACAGACAAGCUCCGAAAAAAAUGGCUUAUGAAAAAUCGCAUGAGUCAUUUAACUGAAGAAGACCGA---AGGCGAAGCAAAUGAAAACUAAUU
...((((((...(..(((.(.......)....((((((((((((........))))))))))))..)))..)..))))))---........................ ( -21.00)
>DroAna_CAF1 3226 93 + 1
GUAAUGGUUACGCAACGGAC--UCUCCGAAA--UAUGGCUUAUAAAAAAUCACAUGAGUCAUUUAACUGCAGAAGA----------UGAAAGAAAUGAAAACUAAUU
....(((((..(((.(((..--...)))...--.(((((((((..........))))))))).....)))......----------....(....)...)))))... ( -14.10)
>consensus
AAAUCGGUUACGCAACGGACGAGCUCCGAAAAAAAUGGCUUAUGAAAAAUCACAUGAGUCAUUUAACUGAAGAAGACUGA___AGGCGAAAGAAAUGAAAACUAAUU
..........(((..((((.....))))....((((((((((((........)))))))))))).....................)))................... (-16.85 = -17.47 +   0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:41 2006