| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,790,257 – 16,790,351 |
| Length | 94 |
| Max. P | 0.500000 |
| Location | 16,790,257 – 16,790,351 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 83.39 |
| Mean single sequence MFE | -22.35 |
| Consensus MFE | -15.36 |
| Energy contribution | -16.25 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.69 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16790257 94 + 20766785 AACG----GCAAAACA---CUAUCUAAGUUGAAUAUUUUUCGCCAACGCAGCAGAAUAGUAAAGCCAGCGGAAACGCAUUUCGUUUUACGACUGCGAUACG ...(----((.....(---((.....))).(((.....))))))..(((((.......(((((((..(((....))).....)))))))..)))))..... ( -23.80) >DroSec_CAF1 101961 94 + 1 AACC----ACAAAACA---CUAUCUAAGUUGAACAUUUUUCGCCAACGCAGCAGAAUAGUAAAGCCAGCGGAAACGCAUUUCGUUUUACGACUGCGAUACG ....----........---.((((...((((............))))...((((....(((((((..(((....))).....)))))))..)))))))).. ( -21.60) >DroSim_CAF1 101088 94 + 1 AAGC----ACAAAACA---CUAUCUAAGUUGAACAUUUUUCGCCAACGCAGCAGAAUAGUAAAGCCAGCGGAAACGCAUUUCGUUUUACGACUGCGAUACG ....----........---.((((...((((............))))...((((....(((((((..(((....))).....)))))))..)))))))).. ( -21.60) >DroEre_CAF1 99849 94 + 1 AACC----AAAGCACA---CUAUAUAAGUUGGGCAUUUUUCGCCAACGCAGCAGAAUAGAAAAGCUAGCGGAAACGCAUUUUGCUUUACGACUGCGAUACG ....----........---.(((...((((((((.......))).....((((((((((.....)))(((....))).)))))))...)))))...))).. ( -22.80) >DroYak_CAF1 106374 94 + 1 CACA----AAAAAACA---CUAGCUAAGUUGGACAGUUUUCGCCAACGCAGCAGAAUAGCAAAGCCAGCGGAAACGCAUUUCGUUUGACGACUGCGAUACG ....----........---((.(((..(((((...(....).)))))..)))))....(((......(((....)))...(((.....))).)))...... ( -22.40) >DroAna_CAF1 124633 94 + 1 AAGUGGGAGGAAAACGCUUCUAUCAAAGUGGGAAAA-UUUCGCCAACACAGCAGAAUAG-AGACCGAGCGGAAACGCAAU-----UUAUAACUGCGAUACG ..((((((((......))))).......(((((...-..)).))).))).((((.((((-(......(((....)))..)-----))))..))))...... ( -21.90) >consensus AACC____ACAAAACA___CUAUCUAAGUUGAACAUUUUUCGCCAACGCAGCAGAAUAGUAAAGCCAGCGGAAACGCAUUUCGUUUUACGACUGCGAUACG ....................((((...((((............))))...((((.............(((....)))...(((.....))))))))))).. (-15.36 = -16.25 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:00 2006