Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 16,777,519 – 16,777,627 |
Length | 108 |
Max. P | 0.990276 |
Location | 16,777,519 – 16,777,627 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 84.10 |
Mean single sequence MFE | -30.43 |
Consensus MFE | -26.66 |
Energy contribution | -26.98 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.06 |
Mean z-score | -2.42 |
Structure conservation index | 0.88 |
SVM decision value | 2.21 |
SVM RNA-class probability | 0.990276 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16777519 108 - 20766785 AAAAAAAAC----AAAAAAAAACAGGGGCGAGGGCGAACAAUAUGAUUUGGGUGUUGGGGACCAAUUAGUUGGCAGUUCGAAGUUAUUAAGUUGUGCCGCUUAUGUCCUUGA .........----.........((((((((..((((.((((((((((((.((.......(.((((....)))))...)).)))))))...)))))..))))..)))))))). ( -29.30) >DroSec_CAF1 89409 102 - 1 ------AGC----AAAAAAAAGCAGGGGCGAGGGCGAACAAUAUGAUUUGGGUGUUGGGGACCAAUUAGUUGGCAUUUCGAAGUUAUUAAGUUGUGCCGCUUAUGUCCUUGA ------...----.........((((((((..((((.(((((.((((.......(((..(.((((....))))..)..)))....)))).)))))..))))..)))))))). ( -29.50) >DroSim_CAF1 87985 106 - 1 ------AACCAAAAAAAAAAAGCAGGGGCGAGGGCGAACAAUAUGAUUUGGGUGUUGGGGACCAAUUAGUUGGCAUUUCGAAGUUAUUAAGUUGUGCCGCUUAUGUCCUUGA ------................((((((((..((((.(((((.((((.......(((..(.((((....))))..)..)))....)))).)))))..))))..)))))))). ( -29.50) >DroEre_CAF1 87384 89 - 1 ----------------------CAGGGGCGAGGGCGAACAAUAUGAUUUGGGUGUUAGGGACCAAUUAGUUGGCAGUUCGAAAUUAUUAAGCUGUGCCGCUUAUGC-CUUGA ----------------------..((((((..((((..((((.(((((.((..........)))))))))))((((((..(.....)..))))))..))))..)))-))).. ( -25.30) >DroYak_CAF1 93604 92 - 1 --------------------CACAGGGGCGAGGGCGAACAAUAUGAUUUGGGUGUUGGGCACCAAUUAGUUGGCUGUUCGAAAUUAUUAAGUGGUGCCGCUUCUGCCCUUGG --------------------..((((((((..(((...((((((.......))))))(((((((.(((((...............))))).))))))))))..)))))))). ( -38.56) >consensus ______A_C____AAAAAAAAACAGGGGCGAGGGCGAACAAUAUGAUUUGGGUGUUGGGGACCAAUUAGUUGGCAGUUCGAAGUUAUUAAGUUGUGCCGCUUAUGUCCUUGA ......................((((((((..((((.((((((((((((.((.......(.((((....)))))...)).)))))))...)))))..))))..)))))))). (-26.66 = -26.98 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:55 2006