Locus 5154

Sequence ID 2R_DroMel_CAF1
Location 16,774,499 – 16,774,619
Length 120
Max. P 0.648348
window8242

overview

Window 2

Location 16,774,499 – 16,774,619
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.83
Mean single sequence MFE -38.08
Consensus MFE -30.28
Energy contribution -30.96
Covariance contribution 0.68
Combinations/Pair 1.10
Mean z-score -1.51
Structure conservation index 0.80
SVM decision value 0.24
SVM RNA-class probability 0.648348
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16774499 120 - 20766785
UCCACAAGCCAAUCAAGUUCUUCAUCGACUUGGUGGAGGAGCUCUUCGCCUACUUCUACAGUGGACACGUACAGUUCGACUGCGCUGCCCACAUGUUGGAUCCCUUGGACUUGAACAGCA
.......((...((((((((...........(((((((.....)))))))....((((((((((.((.(..(((.....)))..))).)))).)).))))......))))))))...)). ( -35.20)
>DroSec_CAF1 86384 120 - 1
UCCACAAGCCAAUCAAGUUCUUCAUCGACUUGGUGGAGGAGCUCUUCGCCUACUUCUACAGUGGUCACGUGCAGUUUGACUGCGCUGCCUACAUGUUGGAUCCCCUGGACCUAAACAGCA
((((....(((((((((((.......))))))(((((((.((.....))...))))))).((((.((.((((((.....)))))))).))))..)))))......))))........... ( -35.00)
>DroSim_CAF1 84658 120 - 1
UCCACAAGCCAAUCAAGUUCUUCAUCGACUUGGUGGAGGAGCUCUUCGCCUACUUCUACAGUGGUCACGUGCAGUUCGACUGCGCUGCCCACAUGCUGGAUCCCUUGGACCUGAACAGUA
((((....(((..((((((.......))))))(((((((.((.....))...))))))).((((.((.((((((.....)))))))).))))....)))......))))........... ( -35.60)
>DroEre_CAF1 84043 120 - 1
UCCACAAGCCAAUUAAAUUCUUUAUGGAGCUGGUGGAGGAGCUGUUCUCCUACUUCUACAGUGGUCACGUGCAGUUUGACUGCGCUGCCCAAAUGUUGGAUCCCUUGGACCUGAACGGCA
(((((.((((...(((.....)))..).))).)))))...((((((((((....((((((.(((.((.((((((.....)))))))).)))..)).))))......)))...))))))). ( -39.40)
>DroYak_CAF1 90626 120 - 1
UCCACAAGCCCAUUAAGUUCUUUAUGGAGUUGGUGGAGGAGCUGUUCGCCUACUUCUACAGUGGUCACGUGCAGUUCGACUGCGCUGCCCAAAUGUUGGAUCCCUUGGAUCUGAACAGCA
(((((.(((((((.((....)).)))).))).)))))...(((((((..........(((.(((.((.((((((.....)))))))).)))..))).((((((...))))))))))))). ( -45.20)
>consensus
UCCACAAGCCAAUCAAGUUCUUCAUCGACUUGGUGGAGGAGCUCUUCGCCUACUUCUACAGUGGUCACGUGCAGUUCGACUGCGCUGCCCACAUGUUGGAUCCCUUGGACCUGAACAGCA
(((.....((.((((((((.......)))))))))).)))(((.(((.((....((((((((((.((.((((((.....)))))))).)))).)).))))......))....))).))). (-30.28 = -30.96 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:54 2006