| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,774,198 – 16,774,299 |
| Length | 101 |
| Max. P | 0.960469 |
| Location | 16,774,198 – 16,774,299 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 73.46 |
| Mean single sequence MFE | -33.66 |
| Consensus MFE | -16.56 |
| Energy contribution | -17.00 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.49 |
| SVM decision value | 1.51 |
| SVM RNA-class probability | 0.960469 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16774198 101 + 20766785 ----------------UCCUGGUCUAAUUCCUGACCGGUGCUUAUGCCAGACAUCUCACUGGGACGUUGGAGUCUAACUAUGGACUUCUUUCGAUCCAGUAAAUUGCUCUCGG---CCUC ----------------..((((((........)))))).......((((((((....((((((.((..((((((((....))))))))...)).))))))....)).))).))---)... ( -35.40) >DroSec_CAF1 86083 101 + 1 ----------------UCCAGCUCUGUUUCCAUACCGGUGCUUAUGCCAGACAUCUUGCUGGGACGUUGGAGUCUAACUAUGGACUUCUUUCGAUCCAGUAAAUUGUUCUCGG---GCUC ----------------...(((((............(((......))).((((..((((((((.((..((((((((....))))))))...)).))))))))..))))...))---))). ( -34.10) >DroSim_CAF1 84357 101 + 1 ----------------UCCAGCUCUGUUUCCAUACCGGUGCUUAUGCCAGACAUCUCGCUGGGACGUUGGAGUCUAACUAUGGACUUCUUUCGAUCCAGUAAGUUGUUCUCGG---UCUC ----------------...(((.(((.........))).)))...((((((((.((..(((((.((..((((((((....))))))))...)).)))))..)).)).))).))---)... ( -32.00) >DroEre_CAF1 83732 111 + 1 CCGCCUAUCCA-------CUAAUGAGU--CCUGACCGGGGCCAAUGCCCGACAUCUCGCUUGGACGUUGCAGUCUAACCAUGGACUUCUUGCGGUCCAAUAAAUUCGUUUCGGUGGCCUC ..(((...((.-------..(((((((--...(((((((((....))))((..(((.(.((((((......)))))).)..)))..))...)))))......)))))))..)).)))... ( -32.60) >DroYak_CAF1 90309 117 + 1 CCGAUUGUCCCGAUUGUCCCAGUCCGUUGCCUGACCAGUUUCCAAGGCCGACGUCUCGCUGGGUCGUUGCAGUCUAACCAUGGACUUCUUUCGAUCUAAUAAAUUGGUUUCGG---GCUC ((((.....((((((..((((((.((((((((............))).)))))....))))))(((..(.((((((....)))))).)...))).......))))))..))))---.... ( -34.20) >consensus ________________UCCAGCUCUGUUUCCUGACCGGUGCUUAUGCCAGACAUCUCGCUGGGACGUUGGAGUCUAACUAUGGACUUCUUUCGAUCCAGUAAAUUGGUCUCGG___CCUC ..................................((((.((....))..........((((((.((..((((((((....))))))))...)).)))))).........))))....... (-16.56 = -17.00 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:53 2006