Locus 5151

Sequence ID 2R_DroMel_CAF1
Location 16,766,420 – 16,766,521
Length 101
Max. P 0.599298
window8239

overview

Window 9

Location 16,766,420 – 16,766,521
Length 101
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 86.90
Mean single sequence MFE -27.40
Consensus MFE -17.46
Energy contribution -17.94
Covariance contribution 0.48
Combinations/Pair 1.09
Mean z-score -2.30
Structure conservation index 0.64
SVM decision value 0.13
SVM RNA-class probability 0.599298
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16766420 101 - 20766785
AAAUCCUGCUGGAAGUGUUCUCAAUGUCCAUCAAAGCAAGCUGGGUGGAAUUGGG----------AGGAAGUGGCUGCCGCCAGGGAAAUACAUAGGAAAAUGAAUAAAAA
...(((((.((....(.((((((((.((((((..((....)).))))))))))))----------)).)..((((....))))........)))))))............. ( -27.20)
>DroSec_CAF1 78405 99 - 1
AGACCUUGCUGGAAGUGUUCUCCAUGUCCAUCAAAGUAAGCUGGGUGGAAU--GG----------AGGAAGUGGCUGCCGCCUGGGAAGUACAUAGGAAAAUGAAUAAAAA
...(((.((.((.(((.((((((((.((((((..((....)).))))))))--))----------))))....))).))))..)))......................... ( -27.90)
>DroSim_CAF1 76707 98 - 1
AGAUCCUGCUGGAAGUGUUCUCCAUGUCCAUCAAAGUAAGCUGGGUGGAAU--GG----------AGGAAGUGGCUGCCGCCAGGGAAAUACAUAGGAAAAUGAAUAA-AA
...(((((.(((.(((.((((((((.((((((..((....)).))))))))--))----------))))....))).))).)))))......................-.. ( -30.90)
>DroEre_CAF1 75868 99 - 1
AUAUCCUGGAGGAAGUGUUCUCAAUGUCCAUCAAAGUCAGCUGGCUGGAAU--GG----------UGGAAGUGGCUGCCGCCAGGGAAAUACAUGGAAAAAUGGAUAAAAA
.(((((........((((((((....(((((((...((((....))))..)--))----------))))..((((....))))))))...))))........))))).... ( -29.89)
>DroYak_CAF1 81807 109 - 1
AGAUCCUGAAGGAAGUGUUCUCAAUGUUCAUCAAAGUAAGCUGGGUUGAAU--GGAGGAAGUGGAUGGAAGUGGCUGCCGCCAGGGAAAUACAUAGAAAAAUGGAUAAAAA
...(((((.........(((((...(((((.(..((....))..).)))))--.))))).((((.(((......)))))))))))).....(((......)))........ ( -21.10)
>consensus
AGAUCCUGCUGGAAGUGUUCUCAAUGUCCAUCAAAGUAAGCUGGGUGGAAU__GG__________AGGAAGUGGCUGCCGCCAGGGAAAUACAUAGGAAAAUGAAUAAAAA
...(((....))).((((((((....((((((..((....)).))))))......................((((....))))))))).)))................... (-17.46 = -17.94 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:51 2006