Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 16,754,934 – 16,755,037 |
Length | 103 |
Max. P | 0.870635 |
Location | 16,754,934 – 16,755,037 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.32 |
Mean single sequence MFE | -31.46 |
Consensus MFE | -22.16 |
Energy contribution | -23.12 |
Covariance contribution | 0.96 |
Combinations/Pair | 1.15 |
Mean z-score | -2.13 |
Structure conservation index | 0.70 |
SVM decision value | 0.87 |
SVM RNA-class probability | 0.870635 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16754934 103 + 20766785 ----------GGGG-------GGGUGGUUUUCCAGCCAUAUAGUCAAGCUACCCUAAGGUGGUUUCUGCUGGCAAUGGAAUCAAAUUGACUGGAAAUGGCCUUUAAAAACUUAAGAUUGU ----------..((-------((((.((((.((((((((.((((.((((((((....))))))))..))))...))))..((.....)))))))))).))))))................ ( -29.10) >DroSec_CAF1 67134 113 + 1 ---CACCAAAGGAAGGGCCACGAAAGGCAUCCCAGCCUUAUAGUCAAGCUACCCUAAGGUGAUUUCUGCUGGCAAUGGAAUCAAAUUGACUGGAAAUGGCCUUUAAAAACUUAAGA---- ---.....(((.((((((((...(((((......))))).(((((((...(((....)))((((((((....))..))))))...)))))))....)))))))).....)))....---- ( -31.80) >DroSim_CAF1 64932 113 + 1 ---UACCAAAGGAAGGGCCACGAAAGGCAUCCCAGCCAUAUAGUCAAGCUACCCUAAGGUGGUUUCUGCUGGCAAUGGAAUCAAAUUGACUGGAAAUGGCCUUUAAAAACUUAAGA---- ---.....(((.(((((((((....).....((((((((.((((.((((((((....))))))))..))))...))))..((.....))))))...)))))))).....)))....---- ( -32.60) >DroEre_CAF1 64441 120 + 1 CUUCCACAAAGGAAGGGCCAGGAAAGACAUGCCAGCCAUAUAGUCAAGCUACCCUAAGGUGGUUUCUGCUGGAAAUGGAAUCAAAUUGACUGGAAAUGGCCUUUAAAAACUAAAGAUGGC (((((.....)))))...............(((((((((.(((((((((((((....))))))(((((.(....)))))).....)))))))...)))))(((((.....))))).)))) ( -33.50) >DroYak_CAF1 70035 120 + 1 CCCCCACAAAGAAAGAGCCAUGAAAGGCAUCUCAGCCAUAUAGUCAAGCUACCCUAAGGUGGUUUCAGCUGAAAAUGGAAUCAAAUUGACUGGAAAUGGCCUUUAAAAACUAAAGAUGGC ...(((.......((((((......))).)))..(((((.(((((((((((((....))))))((((........))))......)))))))...)))))(((((.....))))).))). ( -30.30) >consensus ___CAACAAAGGAAGGGCCACGAAAGGCAUCCCAGCCAUAUAGUCAAGCUACCCUAAGGUGGUUUCUGCUGGCAAUGGAAUCAAAUUGACUGGAAAUGGCCUUUAAAAACUUAAGAU_G_ ............((((((((.....(((......)))...(((((((...(((....)))((((((..........))))))...)))))))....))))))))................ (-22.16 = -23.12 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:48 2006