Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 16,751,577 – 16,751,677 |
Length | 100 |
Max. P | 0.642162 |
Location | 16,751,577 – 16,751,677 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 77.18 |
Mean single sequence MFE | -19.28 |
Consensus MFE | -14.30 |
Energy contribution | -14.70 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.30 |
Structure conservation index | 0.74 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.642162 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16751577 100 + 20766785 AUGAAAACUAUUACAAUGGCAAUUUAAUUGCAAUAUAAUGGCAUAAUGGUGGCUUAAUUGUUUAGGUUCAUUAUUAAUGGUAAAUGGUCAUUUUGUAAA-----------------G ..........((((((((((.(((((..(((.........)))((((((((((((((....))))).)))))))))....))))).)))))..))))).-----------------. ( -19.80) >DroSec_CAF1 63869 80 + 1 AUGAAAACUAUUACAAUGGCAAUUAAU-UGCAAUAUAAUGGCAUAAUGGUGGCUUAAUUGUUUAGGUUCAUUAUUAAUG-------------------A-----------------G .......((((((.....((((....)-)))....))))))((((((((((((((((....))))).)))))))).)))-------------------.-----------------. ( -15.50) >DroSim_CAF1 61641 81 + 1 AUGAAAACUAUUACAAUGGCAAUUAAUUUGCAAUAUAAUGGCAUAAUGGUGGCUUAAUUGUUUAGGUUCAUUAUUAAUG-------------------A-----------------G .......((((((.....((((.....))))....))))))((((((((((((((((....))))).)))))))).)))-------------------.-----------------. ( -16.30) >DroEre_CAF1 61003 110 + 1 AUGAAAACUAUUACAAUGGCAAUUUAAUUGCAAUAUAAUGGCAUAAUGGUGGCUUAAUUGUUUAGGUUCAUUAUUAAUG-------AGCGUUUUGUAUAGCCAAAUGGUGCACGGUA .((...((((((......(((((...))))).......((((.((((((((((((((....))))).)))))))))...-------.((.....))...)))))))))).))..... ( -22.10) >DroYak_CAF1 66588 110 + 1 AUGAAAACUAUUACAAUGGCAAUUUAAUUGCAAUAUAAUUGCAUAAUGGUGGCUUAAUUGUUUAGGUUCAUUAUUAACG-------AGCGUUUUGUAGAGCCAAACUGUGCAUUGUG ...........((((((.(((((...))))).........(((((....((((((.((.....(.((((.........)-------))).)...)).))))))...))))))))))) ( -22.70) >consensus AUGAAAACUAUUACAAUGGCAAUUUAAUUGCAAUAUAAUGGCAUAAUGGUGGCUUAAUUGUUUAGGUUCAUUAUUAAUG_________C_UUUUGUA_A_________________G .......((((((.....((((.....))))....))))))..((((((((((((((....))))).)))))))))......................................... (-14.30 = -14.70 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:46 2006