Locus 5144

Sequence ID 2R_DroMel_CAF1
Location 16,738,072 – 16,738,186
Length 114
Max. P 0.510850
window8227

overview

Window 7

Location 16,738,072 – 16,738,186
Length 114
Sequences 4
Columns 115
Reading direction reverse
Mean pairwise identity 84.25
Mean single sequence MFE -19.95
Consensus MFE -14.59
Energy contribution -14.53
Covariance contribution -0.06
Combinations/Pair 1.13
Mean z-score -1.43
Structure conservation index 0.73
SVM decision value -0.04
SVM RNA-class probability 0.510850
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16738072 114 - 20766785
GCCCAUAAAUAUGAAGCAUAAAA-AACUAUUAUAACCUACAUAUACAUACAUAUAUUAUUGCGGGCUGGCAAAAAUUAAUGUCAUCAUCGAGCCGCAAGCAAAUUGGCUCCGAAG
((((....(((((.((.((((..-.....))))...)).))))).....((........)).))))(((((........)))))...((((((((.........))))).))).. ( -19.60)
>DroSec_CAF1 45929 103 - 1
GCCCAUAAAUAUGGAGCAUAAAA-AUAUAUUAUAACC-----------AUAUAUAUUAUUACGGGCUGGCAAAAAUUAAUGUCAUCAUCGAGCCGCAAGCAAAUUGGCUACGAAG
(((((((.((((((...((((..-.....))))..))-----------)))).)))......))))(((((........)))))...((((((((.........))))).))).. ( -21.70)
>DroSim_CAF1 48485 103 - 1
GCCCAUAAAUAUGGAGCAUAAAAAAAAUGUUAUAA-C-----------AUAUAUAUUAUUACGGGCUGGCAAAAAUUAAUGUCAUCAUCGAGCCGCAAGCAAAUUGGCUACGAAG
(((((((.(((((.(((((.......)))))....-)-----------)))).)))......))))(((((........)))))...((((((((.........))))).))).. ( -22.80)
>DroEre_CAF1 47411 94 - 1
GCCCAUAAAUAUGGAGCAUAAA--AAAUAUUAUAAC----------------AUACAAUUACGGGCUGG---AAAUUAAUGCCAUCAUCGAGCCGCAAGCAAAUUGGUUUCGAGG
((((((....)))).)).....--............----------------.............((.(---(((((((((((......).))(....)...))))))))).)). ( -15.70)
>consensus
GCCCAUAAAUAUGGAGCAUAAAA_AAAUAUUAUAACC___________AUAUAUAUUAUUACGGGCUGGCAAAAAUUAAUGUCAUCAUCGAGCCGCAAGCAAAUUGGCUACGAAG
((((.....((((...)))).................................((....)).))))(((((........)))))...((((((((.........))))).))).. (-14.59 = -14.53 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:40 2006