| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,730,762 – 16,730,874 |
| Length | 112 |
| Max. P | 0.920007 |
| Location | 16,730,762 – 16,730,874 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 90.83 |
| Mean single sequence MFE | -48.53 |
| Consensus MFE | -41.93 |
| Energy contribution | -42.10 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.86 |
| SVM decision value | 1.13 |
| SVM RNA-class probability | 0.920007 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16730762 112 + 20766785 AGGCGCUGCUCCUUGGUGGCCAGCAGCUGGUGCUGGCUGUCGAUUUGCUGCUGCUGUCUCAAUGCCAUCGCCCUCAGUUCGGCUGACGUCAGCCUGCUGGGCACCUGCAAUA------- .(((((.((...((((..(((((((.....)))))))..))))...)).)).))).......(((....((((..(((..(((((....))))).)))))))....)))...------- ( -47.30) >DroVir_CAF1 59755 112 + 1 AACCGUUGCUCCUUUGUGGCCAGCAGCUGGUGCUGGCUGUCGAUUUGCUGCUGCUGUCGCAGUGCCAUCGCCCUCAGUUCGGCUGACGUCAGCCUGCUGGGCACCUGCAUGG------- ..((((.((......(((.(((((((.....((((((.((((((..((.(((((....))))))).)))(((........))).)))))))))))))))).)))..))))))------- ( -47.00) >DroGri_CAF1 54832 112 + 1 AGCCGUUGUUCCUUUGUGGCCAGCAGCUGGUGCUGGCUGUCGAUUUGCUGCUGCUGUCGCAGUGCCAUCGCCCUCAGUUCGGCUGACGUCAGCCUGCUGGGCACCUGCAUAU------- (((.((.((....((((((((((((.....))))))))).)))...)).)).)))...((((((((........((((..(((((....))))).)))))))).))))....------- ( -44.40) >DroWil_CAF1 53313 116 + 1 AAACGCUGCUCCUUUGUGGCCAGCAGCUGGUGCUGGCUGUCGAUUUGCUGCUGCUGUCGCAAAGCCAUCGCCCUCAGUUCGGCUGACGUCAGCCUGCUGGGCACCUGCCAUC---AAGA ....((((((((.....))..)))))).((((.(((((..((((..((....)).))))...))))).))))..((((..(((((....))))).))))(((....)))...---.... ( -48.50) >DroMoj_CAF1 53750 112 + 1 AACCGUUGCUCCUUUGUGGCCAGCAGCUGGUGCUGGCUGUCGAUUUGCUGCUGCUGUCGCAAUGCCAUCGCCCUCAACUCGGCUGACGUCAGCCUGCUGGGCACCUGCAACG------- ...((((((......(((.((((((...((((.((((((.((((..((....)).))))))..)))).))))........(((((....))))))))))).)))..))))))------- ( -49.90) >DroAna_CAF1 56272 117 + 1 AGGCGCUGCUCCUUGGUGGCCAGCAGUUGGUGCUGGCUGUCGAUUUGCUGCUGCUGUCGCAAUGCCAUCGCCCUCAGUUCGGCUGACGUCAGCCUGCUGGGCACCUGGAAUGCACAA-- ..(.((...(((..((((.(((((((..((((.((((((.((((..((....)).))))))..)))).))))..).....(((((....))))))))))).)))).)))..)).)..-- ( -54.10) >consensus AACCGCUGCUCCUUUGUGGCCAGCAGCUGGUGCUGGCUGUCGAUUUGCUGCUGCUGUCGCAAUGCCAUCGCCCUCAGUUCGGCUGACGUCAGCCUGCUGGGCACCUGCAAUG_______ ...............(((.(((((((..((((.((((((.((((..((....)).))))))..)))).))))..).....(((((....))))))))))).)))............... (-41.93 = -42.10 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:35 2006