Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 16,723,514 – 16,723,605 |
Length | 91 |
Max. P | 0.679752 |
Location | 16,723,514 – 16,723,605 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 74.96 |
Mean single sequence MFE | -24.78 |
Consensus MFE | -14.88 |
Energy contribution | -14.85 |
Covariance contribution | -0.03 |
Combinations/Pair | 1.19 |
Mean z-score | -1.44 |
Structure conservation index | 0.60 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.679752 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16723514 91 - 20766785 AGGGAGUGCAUUAUGCUGUGCCCAUGCUGGGUAUACCCUUCUACUGUGAUCAGGUAUUU-----GUAUAUUUCACUAAUUAUAUAAAUAA-CUGCUU ((((...((.....))(((((((.....)))))))))))...........(((.(((((-----(((((..........)))))))))).-)))... ( -23.40) >DroPse_CAF1 33593 90 - 1 AAGGAGUGCACUACGCCGUGCCCAUGCUGGGCAUCCCCUUCUACUGCGAUCAGGUAGGG-----ACU-UUCCCCCGAAGUGGCUAAUUCA-CUGCUA .((.((((...((.(((((((((.....)))))).((((....(((....)))..))))-----(((-((.....))))))))))...))-)).)). ( -28.80) >DroSec_CAF1 31586 95 - 1 AGGGAGUGCAUUAUGCUGUGCCCAUGCUGGGUAUUCCCUUCUACUGUGAUCAGGUAUAUGUAC-AUAUAUUUUACUAAUUAUAUAAAUAA-CUGCUC .(((.((((((.((((.((((((.....)))))).........(((....)))))))))))))-(((((.((....)).)))))......-...))) ( -19.60) >DroEre_CAF1 32498 91 - 1 AGGGAGUGCACUACGCUGUGCCCAUGCUGGGUAUACCCUUCUACUGUGAUCAGGUACUC-----GUAUAUUUCAAUUAUUAUAUAAAUCU-CUGUUU ...((((((.......(((((((.....)))))))........(((....)))))))))-----(((((..........)))))......-...... ( -19.90) >DroYak_CAF1 38065 91 - 1 AGGGAGUGCACUACGCUGUGCCCAUGCUGGGUAUACCCUUCUAUUGUGAUCAGGUACUU-----GUUUAUUCCGAUUAUUAUAUAGAUAU-CUGUUU ((((((((.....))))((((((.....)))))).))))(((((.((((((.((.....-----.......))))))))...)))))...-...... ( -23.90) >DroMoj_CAF1 43423 88 - 1 AGGGCGUGCACUACGCCGUGCCCAUGCUGGGCAUGCCCUUCUACUGCGACCAGGUGAGC----GACU-U----AGUAGUCAAGUAGAAGAUUUGUUU ..((((((...))))))((((((.....))))))...((((((((((..........))----((((-.----...)))).))))))))........ ( -33.10) >consensus AGGGAGUGCACUACGCUGUGCCCAUGCUGGGUAUACCCUUCUACUGUGAUCAGGUACUU_____AUAUAUUUCACUAAUUAUAUAAAUAA_CUGCUU ((((...((.....))(((((((.....)))))))))))....(((....)))............................................ (-14.88 = -14.85 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:29 2006