Locus 5135

Sequence ID 2R_DroMel_CAF1
Location 16,713,934 – 16,714,030
Length 96
Max. P 0.654110
window8212

overview

Window 2

Location 16,713,934 – 16,714,030
Length 96
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 92.72
Mean single sequence MFE -19.42
Consensus MFE -17.94
Energy contribution -17.97
Covariance contribution 0.03
Combinations/Pair 1.05
Mean z-score -1.08
Structure conservation index 0.92
SVM decision value 0.25
SVM RNA-class probability 0.654110
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16713934 96 - 20766785
CC------GCAACCGACCAUCUUGAUUUGAAUCAUUUCCAUCUAUCGAUGGCGUAAACCGAAACAUUUUCCUGGCUCUUUGCCAAAUCGAUGCAAAUUAGAA
..------...........(((.((((((.(((....(((((....)))))....................((((.....))))....))).))))))))). ( -19.20)
>DroSec_CAF1 22007 96 - 1
CC------GCAACCGACCAUCUUGAUUUGAAUCAUUUCCAUCUAUCGAUGGCGUAAACCGAAACAUUUUCCUGGCUCUUUGCCAAAUCGAUGCAAAUUAGAA
..------...........(((.((((((.(((....(((((....)))))....................((((.....))))....))).))))))))). ( -19.20)
>DroSim_CAF1 23617 96 - 1
CC------GCAACCGACCAUCUUGAUUUGAAUCAUUUCCAUCUAUCGAUGGCGUAAACCGAAACAUUUUCCUGGCUCUUUGCCAAAUCGAUGCAAAUUAGAA
..------...........(((.((((((.(((....(((((....)))))....................((((.....))))....))).))))))))). ( -19.20)
>DroEre_CAF1 22072 96 - 1
CC------GCAACCGACCAUCUUGAUUUGAAUCAUUUCCAUCUAUCGAUGGCGUAAGCCGAAACAUUUUCCUGGCUCUUGGCCAAAUCGAUGCAAAUUAGAA
..------...........(((.((((((.............((((((((((....)))............((((.....)))).)))))))))))))))). ( -21.61)
>DroYak_CAF1 22055 96 - 1
CC------GCAGCCGACCAUCUUGAUUUGAAUCAUUUCCAUCUAUCGAUGGCGUAAACCGAAACAUUUUCCUGGCUCUUGGCCAAAUCGAUGCAAAUUAGAA
..------...........(((.((((((.(((....(((((....)))))....................((((.....))))....))).))))))))). ( -19.00)
>DroAna_CAF1 27823 102 - 1
CCCCCGUCCCAGCCCACCGUUUCGAUUUGAAUCAUUUCCAUCUAUCUAUGGCGUAAAGCGAAACAUUUCCUUGGCACUUGGCCAAAUCGAUGCAAAUUAGAG
....((((..........((((((.((((..((((............))))..)))).))))))......(((((.....)))))...)))).......... ( -18.30)
>consensus
CC______GCAACCGACCAUCUUGAUUUGAAUCAUUUCCAUCUAUCGAUGGCGUAAACCGAAACAUUUUCCUGGCUCUUGGCCAAAUCGAUGCAAAUUAGAA
...................(((.((((((.(((....(((((....)))))....................((((.....))))....))).))))))))). (-17.94 = -17.97 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:26 2006