Locus 5133

Sequence ID	2R_DroMel_CAF1
Location	16,710,189 – 16,710,282
Length	93
Max. P	0.896572

overview

Window 9

Location	16,710,189 – 16,710,282
Length	93
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	88.63
Mean single sequence MFE	-29.32
Consensus MFE	-26.09
Energy contribution	-26.13
Covariance contribution	0.04
Combinations/Pair	1.04
Mean z-score	-1.61
Structure conservation index	0.89
SVM decision value	0.99
SVM RNA-class probability	0.896572
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16710189 93 - 20766785
AAAGGUCGGGGGUCGUGGGCUGCGGGUUGAGCUUUUGGGUCUGGGUCAAGUGACUGAACAAAUUCCCGUUCAGGCGUGAUGAGGCCCAGAUCA
((((.(((..(.((((.....)))).)))).))))..((((((((((..((.(((((((........)))))...)).))..)))))))))). ( -31.00)
>DroSec_CAF1 18318 93 - 1
AAAGGUCGGGGGUCGUGGGUUGCGGGUUGAGCUUUUGGGUCUGGGUCAAGUGACUGAACAAAUUCCCGUUCAGGCGUGAUGAGGCCCAGAUCA
((((.(((..(.((((.....)))).)))).))))..((((((((((..((.(((((((........)))))...)).))..)))))))))). ( -31.00)
>DroSim_CAF1 19930 79 - 1
AAAGGUCGGGG--------------GUUGAGCUUUUGGGUCUGGGUCAAGUGACUGAACAAAUUCCCGUUCAGGCGUGAUGAGGCCCAGAUCA
......(((((--------------(.....))))))((((((((((..((.(((((((........)))))...)).))..)))))))))). ( -27.60)
>DroEre_CAF1 18426 79 - 1
AAAGGUCGGGG--------------GUUGAGCUUUUGGGUCUGGGUCAAGUGACUGAACAAAUUCCCGUUCAGGCGUGAUGAGGCCCGGAUCA
......(((((--------------(.....))))))((((((((((..((.(((((((........)))))...)).))..)))))))))). ( -26.90)
>DroYak_CAF1 18380 79 - 1
AAAGGUCGUGG--------------GUUGAGCUUUUGGGUCUGGGUCAAGUGACUGAACAAAUUCCCGUUCAGACGUGAUGUGGCCCAGAUCA
((((.(((...--------------..))).))))..(((((((((((.(((.((((((........)))))).)))....))))))))))). ( -30.10)
>consensus
AAAGGUCGGGG______________GUUGAGCUUUUGGGUCUGGGUCAAGUGACUGAACAAAUUCCCGUUCAGGCGUGAUGAGGCCCAGAUCA
((((.((((.................)))).))))..((((((((((..((.(((((((........)))))...)).))..)))))))))). (-26.09 = -26.13 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:23 2006