Locus 5132

Sequence ID	2R_DroMel_CAF1
Location	16,707,880 – 16,707,978
Length	98
Max. P	0.524535

overview

Window 8

Location	16,707,880 – 16,707,978
Length	98
Sequences	4
Columns	114
Reading direction	forward
Mean pairwise identity	70.43
Mean single sequence MFE	-17.84
Consensus MFE	-8.81
Energy contribution	-8.12
Covariance contribution	-0.69
Combinations/Pair	1.38
Mean z-score	-1.73
Structure conservation index	0.49
SVM decision value	-0.02
SVM RNA-class probability	0.524535
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16707880 98 + 20766785
---------------AUUUUUUCUCACUUAUACAUUUACCCAACUUGCCUUCGUGA-CUAUAUACCCUGUGUAGUUCACAUAUAGAGGGUAUAAUAAAUCUCCCACCGGCUUUU
---------------...............................(((...((((-((((((.....)))))).)))).......(((............)))...))).... ( -17.30)
>DroSec_CAF1 16038 109 + 1
AUUUAUUUAGGUUAU---UUUUUUCACUCAUAUAU-UACCCAACUUGCUUUCGUUA-CUAUAUACCCUGCAUCGUUCACAUAUACAGGGUAUAAUAAAUCUCCCACCGGCUUUU
.........(((...---.................-.....(((........))).-...(((((((((...............)))))))))...........)))....... ( -13.56)
>DroEre_CAF1 16116 93 + 1
---------------------UUCCAAUUAUAAAUUUGUGCAGCUAGAACACGCGCCCUAUAUACCCUUGAUAUUUCACGAGUAGGGGGUACAAUAAAUCUCCCACCGGCUUUU
---------------------.....................((........))(((.....(((.(.(((....))).).)))(((((..........)))))...))).... ( -15.60)
>DroYak_CAF1 16054 94 + 1
A-------------------UUUUCAAUUAUAAAUUUGC-CGGCUAGCACACGCGCCCCAUAUACCCUUGAUAUUUCACGAGUAGGGGGUACAAUAAAUCUCCCACCGGCUUUU
.-------------------.................((-(((...((....))(((((...(((.(.(((....))).).))).)))))...............))))).... ( -24.90)
>consensus
____________________UUUUCAAUUAUAAAUUUACCCAACUAGCACACGCGA_CUAUAUACCCUGGAUAGUUCACAAAUAGAGGGUACAAUAAAUCUCCCACCGGCUUUU
..........................................((........))......(((((((((.((.........)).)))))))))..................... ( -8.81 =  -8.12 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:23 2006