Locus 5130

Sequence ID 2R_DroMel_CAF1
Location 16,693,733 – 16,693,847
Length 114
Max. P 0.858657
window8205

overview

Window 5

Location 16,693,733 – 16,693,847
Length 114
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 76.51
Mean single sequence MFE -37.02
Consensus MFE -26.88
Energy contribution -25.13
Covariance contribution -1.74
Combinations/Pair 1.48
Mean z-score -1.32
Structure conservation index 0.73
SVM decision value 0.82
SVM RNA-class probability 0.858657
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16693733 114 + 20766785
UACUACAAUGCAAACCAGAGAGUUCCCGAUCAGUUGAUCUUGGGCGCACCCUGCAUUGUUAAAUGCGAUCAGGAAUGGUACCGUGCAGAGAUUCUGCGCGUUGAUGACUCUG---UG
...............(((((.(((((.((((..........(((....))).(((((....))))))))).))))).....(((((((.....))))))).......)))))---.. ( -37.60)
>DroPse_CAF1 3396 114 + 1
UACUACAACAUCAACCAGAAGGUACCCGACAAACUCACCCUGGGUGCCCCCUGCAUCGUCAAAUGCGAUCAGGAGUGGUAUCGUGCAGAGAUCCUGCGUGUCGAUGACUCUG---UA
((((((..............((((((((............)))))))).((((.(((((.....))))))))).))))))...(((((((.((...((...))..)))))))---)) ( -36.50)
>DroWil_CAF1 3818 117 + 1
UAUUACAACAUACAUCAGGUGGUGCCUGAUCAAUUGAUCUUGGGUGCUCCCUGCAUAGUGAAAUGCGAUCAGGAAUGGUAUCGGGCAGAGAUUCUACGUGUGGCUGAUUCCACAAUU
..................(((((((((((((..((((((..(((....))).((((......)))))))))).....).))))))))......)))).(((((......)))))... ( -32.20)
>DroMoj_CAF1 2230 117 + 1
UACUAUAAUGUCAAUCAAGUGGUGCCCGAGCAGCUGGUGCUGGGUGCCCCGUGCGUCGUUAAAUGCGACCGCGAAUGGUAUCGUGCGGAGCUGCUGCGCAUAGAUGACACCACAAUC
........(((((((((...((..(((.((((.....)))))))..)).((((.(((((.....)))))))))..))))...((((((.....)))))).....)))))........ ( -43.10)
>DroAna_CAF1 2064 114 + 1
UACUAUAAUGCAAACCAAAAAGUGCCUGACCAACUGGUCCUGGGUGCUCCGUGCAUCGUUAAAUGCGACCAGGAGUGGUACCGAGCGGAGAUCCUCCGCGUUGAUGACUCUG---UG
........((((........((..(((((((....))))..)))..))...))))((((.....))))...(((((.((.....((((((...))))))....)).))))).---.. ( -36.20)
>DroPer_CAF1 2089 114 + 1
UACUACAACAUCAACCAGAAGGUACCCGACAAACUCACCCUGGGUGCCCCCUGCAUCGUCAAAUGCGAUCAGGAGUGGUAUCGUGCAGAGAUCCUGCGUGUCGAUGACUCUG---UA
((((((..............((((((((............)))))))).((((.(((((.....))))))))).))))))...(((((((.((...((...))..)))))))---)) ( -36.50)
>consensus
UACUACAACAUAAACCAGAAGGUGCCCGACCAACUGAUCCUGGGUGCCCCCUGCAUCGUUAAAUGCGAUCAGGAAUGGUAUCGUGCAGAGAUCCUGCGCGUCGAUGACUCUG___UA
.......((((..((((...((((((((............)))))))).((((.(((((.....)))))))))..)))).....((((.....))))))))................ (-26.88 = -25.13 +  -1.74)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:20 2006