Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,790,292 – 2,790,393 |
Length | 101 |
Max. P | 0.997097 |
Location | 2,790,292 – 2,790,393 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 89.00 |
Mean single sequence MFE | -31.68 |
Consensus MFE | -27.42 |
Energy contribution | -28.58 |
Covariance contribution | 1.16 |
Combinations/Pair | 1.09 |
Mean z-score | -2.42 |
Structure conservation index | 0.87 |
SVM decision value | 2.80 |
SVM RNA-class probability | 0.997097 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2790292 101 + 20766785 UUCACUCAAAAAACAAGUUUUGGUUGUGUUUUUCAUUUUGCGCGGGAACUUUAUCGCCCGUGCAGUGUUGGAAAGCAGAGGCAUAAAUGCGCCUUACAGCA ......(((((......)))))(((((((((((((..(((((((((..........)))))))))...)))))))).(((((........)))))))))). ( -35.50) >DroSec_CAF1 24278 101 + 1 UUCACUCAAAAAACAAAUUUUGGUUGUGUUUUUCAUUUUGCGCGGGAACUUUAUCGCCCGUGCAGUGUUGGAAAGCAGAGGCAUAAAUGCGCCUUACAGCA ......(((((......)))))(((((((((((((..(((((((((..........)))))))))...)))))))).(((((........)))))))))). ( -35.50) >DroSim_CAF1 39691 101 + 1 UUCACUCAAAAAACAAGUUUUGGUUGUGUUUUUCAUUUUGCGCGGGAACUUUAUCGCCCGUGCAGUGUUGGAAAGCAGAGGCAUAAAUGCGCCUUACAGCA ......(((((......)))))(((((((((((((..(((((((((..........)))))))))...)))))))).(((((........)))))))))). ( -35.50) >DroEre_CAF1 21743 100 + 1 UUCGCACAAAAGA-CUGUUUUGGUUGUGUUUUUCAUUUUGCGCGGGAAGUUUCUCUCCCGUCUAGUGCUGGGUAGCGGAGGCAUAAAUGCGCCUUACAGCA ...((((...(((-(..........((((..........))))((((........)))))))).))))......((.(((((........)))))...)). ( -27.80) >DroYak_CAF1 21634 99 + 1 UUCCCUUAAAA-C-CAGUUUUGAUUCUGUUUUUCAUUUUGCGCGGGAAGUUUCUCGCCCGUCAAGUGUUGGAUAGCGGAGACAUAAUUGCGCCUUACAGCA ...........-.-(((((.((.(((((((.((((.((((.(((((..........)))))))))...)))).))))))).)).))))).((......)). ( -24.10) >consensus UUCACUCAAAAAACAAGUUUUGGUUGUGUUUUUCAUUUUGCGCGGGAACUUUAUCGCCCGUGCAGUGUUGGAAAGCAGAGGCAUAAAUGCGCCUUACAGCA ......(((((......)))))(((((((((((((..(((((((((..........)))))))))...)))))))).(((((........)))))))))). (-27.42 = -28.58 + 1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:36 2006