Locus 513

Sequence ID 2R_DroMel_CAF1
Location 2,790,292 – 2,790,393
Length 101
Max. P 0.997097
window970

overview

Window 0

Location 2,790,292 – 2,790,393
Length 101
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 89.00
Mean single sequence MFE -31.68
Consensus MFE -27.42
Energy contribution -28.58
Covariance contribution 1.16
Combinations/Pair 1.09
Mean z-score -2.42
Structure conservation index 0.87
SVM decision value 2.80
SVM RNA-class probability 0.997097
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2790292 101 + 20766785
UUCACUCAAAAAACAAGUUUUGGUUGUGUUUUUCAUUUUGCGCGGGAACUUUAUCGCCCGUGCAGUGUUGGAAAGCAGAGGCAUAAAUGCGCCUUACAGCA
......(((((......)))))(((((((((((((..(((((((((..........)))))))))...)))))))).(((((........)))))))))). ( -35.50)
>DroSec_CAF1 24278 101 + 1
UUCACUCAAAAAACAAAUUUUGGUUGUGUUUUUCAUUUUGCGCGGGAACUUUAUCGCCCGUGCAGUGUUGGAAAGCAGAGGCAUAAAUGCGCCUUACAGCA
......(((((......)))))(((((((((((((..(((((((((..........)))))))))...)))))))).(((((........)))))))))). ( -35.50)
>DroSim_CAF1 39691 101 + 1
UUCACUCAAAAAACAAGUUUUGGUUGUGUUUUUCAUUUUGCGCGGGAACUUUAUCGCCCGUGCAGUGUUGGAAAGCAGAGGCAUAAAUGCGCCUUACAGCA
......(((((......)))))(((((((((((((..(((((((((..........)))))))))...)))))))).(((((........)))))))))). ( -35.50)
>DroEre_CAF1 21743 100 + 1
UUCGCACAAAAGA-CUGUUUUGGUUGUGUUUUUCAUUUUGCGCGGGAAGUUUCUCUCCCGUCUAGUGCUGGGUAGCGGAGGCAUAAAUGCGCCUUACAGCA
...((((...(((-(..........((((..........))))((((........)))))))).))))......((.(((((........)))))...)). ( -27.80)
>DroYak_CAF1 21634 99 + 1
UUCCCUUAAAA-C-CAGUUUUGAUUCUGUUUUUCAUUUUGCGCGGGAAGUUUCUCGCCCGUCAAGUGUUGGAUAGCGGAGACAUAAUUGCGCCUUACAGCA
...........-.-(((((.((.(((((((.((((.((((.(((((..........)))))))))...)))).))))))).)).))))).((......)). ( -24.10)
>consensus
UUCACUCAAAAAACAAGUUUUGGUUGUGUUUUUCAUUUUGCGCGGGAACUUUAUCGCCCGUGCAGUGUUGGAAAGCAGAGGCAUAAAUGCGCCUUACAGCA
......(((((......)))))(((((((((((((..(((((((((..........)))))))))...)))))))).(((((........)))))))))). (-27.42 = -28.58 +   1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:36 2006