Locus 5127

Sequence ID 2R_DroMel_CAF1
Location 16,686,284 – 16,686,389
Length 105
Max. P 0.919796
window8198

overview

Window 8

Location 16,686,284 – 16,686,389
Length 105
Sequences 4
Columns 118
Reading direction reverse
Mean pairwise identity 79.28
Mean single sequence MFE -26.46
Consensus MFE -20.93
Energy contribution -22.06
Covariance contribution 1.13
Combinations/Pair 1.21
Mean z-score -1.90
Structure conservation index 0.79
SVM decision value 1.13
SVM RNA-class probability 0.919796
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16686284 105 - 20766785
------UAAAGCUACCUUAUUGGGAUAAGUGUAGCGUUUACCCUUAAUAUAUAUU-------AUUAAAUAGAGUGUACCAAGCUUUUGCCCUCAAACGUGCACUUUAUCCUUGGCGCC
------....((((.......((((((((((((.(((((....((((((.....)-------)))))...(((.(((.........))).))))))))))))).)))))))))))... ( -25.31)
>DroSec_CAF1 7459 112 - 1
------UUAAGCUACCUUAUUGGGAUAAGUGUAGCGUUUACCCUCUAUAUAUAUAGAGCACAAAUAAAAAGAGUGUAUCAAGCUUUUACCCUCAAACGUGCACUUUAUCCUUGGCGCC
------....((((.......((((((((((((.(((((...((((((....))))))............(((.(((.........))).))))))))))))).)))))))))))... ( -29.41)
>DroSim_CAF1 7475 112 - 1
------UUAAGCUACCUUAUUGGGAUAAGUGUAGCGUUUACCCUCAAUAUAUAUAGAGUACAAAUAAAAAGAGUGUAUCAAGCUUUUACCCUCAAACGUGCACUUUAUCCUUGGCGCC
------....((((.......((((((((((((.(((((...(((..........)))............(((.(((.........))).))))))))))))).)))))))))))... ( -25.21)
>DroEre_CAF1 7802 115 - 1
GCAAGCUUAUGCUUCUU-UUUUGGAGAGGCGCAGCGUUUAAACUUGAUAU--AUAGAGCAAUACUAAGAAGGAUGUAUUAUUCUUCUAUCCCCAAACGUGCACUUUAUCCUUGGCGCC
.((((..((.(((((((-.....)))))))(((.(((((...........--.((((....).)))(((((((((...)))))))))......))))))))....))..))))..... ( -25.90)
>consensus
______UUAAGCUACCUUAUUGGGAUAAGUGUAGCGUUUACCCUCAAUAUAUAUAGAGCACAAAUAAAAAGAGUGUAUCAAGCUUUUACCCUCAAACGUGCACUUUAUCCUUGGCGCC
..........((((.......((((((((((((.(((((...((((((....))))))............(((.(((.........))).))))))))))))).)))))))))))... (-20.93 = -22.06 +   1.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:13 2006