| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,671,756 – 16,671,867 |
| Length | 111 |
| Max. P | 0.572389 |
| Location | 16,671,756 – 16,671,867 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 80.24 |
| Mean single sequence MFE | -30.28 |
| Consensus MFE | -19.52 |
| Energy contribution | -20.41 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.572389 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16671756 111 - 20766785 CGUAAAAUUGAACUUCAAGCUUUAAUUUUAAUUUUUU--UUCCUGCAGGCAUUGGGGGACCACCACAUCCUAUGGCCUUGCCACCGGGAGCUCCAUUUCCUCCGCCUGGAGCU ..((((((((((........)))))))))).......--...((.(((((...((((((........((((.((((...))))..))))........))))))))))).)).. ( -32.79) >DroSec_CAF1 17966 107 - 1 CGUAAAAUUGAAUUUCAAACUUUAAUUUUAAUU------UUCCUGCAGGCAUUGGGGGACCACCACAUCCUAUGGGCUUGCCACCAGGAGCUCCGUUUCCUCCGCCUGGAGCU ..((((((((((........))))))))))...------.(((((..((((.(((....)))(((.......)))...))))..)))))((((((...........)))))). ( -32.10) >DroSim_CAF1 11592 107 - 1 CGUAAAAUUGAAUUUCAAGCUUUAAUUUUAAUU------UUCCUGCANGCAUUGGGGGACCACCACAUCCCAUGGGCUUGCCACCAGGAGCUCCGUUUCCUCCGCCUGGAGCU ..((((((((((........))))))))))...------.(((((...(((.(((....)))(((.......)))...)))...)))))((((((...........)))))). ( -28.50) >DroEre_CAF1 18047 105 - 1 UGUAAAACUGAACUUCCAGCU--GAUUUUAAAU------UUCCCACAGGCAUUGGUGGACCACCACAUCCUAUGGGCUUGCCACCAGGAGCUCCGUUUCCUCCGCCCGGAGCU .......(((......)))..--..........------..((((.(((...(((((...)))))...))).))))((((....))))(((((((...........))))))) ( -26.60) >DroYak_CAF1 17904 105 - 1 CGUAAAACUGAACUUCCAGCU--GAUUUUAAGU------UGCCUACAGGCAUUGGAGGACCUCCACAUCCUAUGGGUUUGCCACCAGGAGCUCCGUUUCCUCCGCCUGGAGCU .............(((((((.--..........------((((....))))..((((((........((((...((....))...))))........))))))).)))))).. ( -30.29) >DroAna_CAF1 15314 111 - 1 UGCGAAAUACUGUGCCAAAAU--AUUAUUAAUUUUUUGUAAUCCACAGGUAUGGGCGGACCUCCGCACCCUAUGGGCAUGCCUCCGGGAGCGCCUUAUCCUCCGCCAGGGGCA ...........(((((((((.--..........)))))...(((..(((((((.((((....)))).(((...))))))))))...)))))))......((((....)))).. ( -31.40) >consensus CGUAAAAUUGAACUUCAAGCU__AAUUUUAAUU______UUCCUACAGGCAUUGGGGGACCACCACAUCCUAUGGGCUUGCCACCAGGAGCUCCGUUUCCUCCGCCUGGAGCU ..........................................((.(((((...((((((........((((...((....))...))))........))))))))))).)).. (-19.52 = -20.41 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:12 2006