Locus 5124

Sequence ID 2R_DroMel_CAF1
Location 16,668,127 – 16,668,247
Length 120
Max. P 0.538567
window8194

overview

Window 4

Location 16,668,127 – 16,668,247
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 83.61
Mean single sequence MFE -31.08
Consensus MFE -20.49
Energy contribution -21.55
Covariance contribution 1.06
Combinations/Pair 1.17
Mean z-score -1.59
Structure conservation index 0.66
SVM decision value 0.01
SVM RNA-class probability 0.538567
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16668127 120 + 20766785
CGCUUCGAAAUUAGAGCUGGGCCAAAGUCGAUGCUGAUGAGAUGCUAUCGAUGCUAGCUGUAAUUCGCUGAUAUCGAUAUUUUCACGCAAUCAUCGAAUGUUUCGCAAUUUUCGCUAAGC
.(((((((((.....((..(((.....((((((.((.(((((...((((((((.((((........)))).)))))))).)))))..))..))))))..)))..))...)))))..)))) ( -31.90)
>DroSec_CAF1 14005 120 + 1
CGCUUCGAAAUUAGAGCUGGAACAAAGUCGAUUGGUAUGAAAUGCUAUCGAUGCUAGCCGUAAUUUGCUGAUAUCGAUAUUUUCACGCAAUCAUCGAGUGCUUUGCAGUUUUCGCUAAGC
.(((((((.....((((((.((...(.(((((..(..(((((...((((((((.((((........)))).)))))))).)))))..)....))))).)...)).)))))))))..)))) ( -33.40)
>DroEre_CAF1 14196 120 + 1
CGCUUCGAACUUAGAGGUGGAACAAAGUCGAUGUUCAUGAAAUACUAUCGAUGCCAGUCGAUAUUCGAUGAUAUCGAUAUUAUCCCGCAAUCACCAAAUGGUUCACAUCUUUCGAUAAGC
.((((((((...(((.((((......((((((((.((((((....(((((((....)))))))))).)))))))))))......))))....(((....))).....))))))))..))) ( -30.60)
>DroYak_CAF1 14086 120 + 1
CGCUUCGAAAUUAGAGCUGGAACAUAGUCGAUGUUCAUGAAAUACUAUCGAUGGUAGCCUUUAUUCGCUGAUAUCGAUACUUACCCGCAAUCAUCAAAUGCUUCACAGUUUUCUCUUAGC
.(((..((....(((((((((((((.....)))))).((((....((((((((.((((........)))).)))))))).......(((.........)))))))))))))).))..))) ( -28.40)
>consensus
CGCUUCGAAAUUAGAGCUGGAACAAAGUCGAUGUUCAUGAAAUACUAUCGAUGCUAGCCGUAAUUCGCUGAUAUCGAUAUUUUCACGCAAUCAUCAAAUGCUUCACAGUUUUCGCUAAGC
.(((((((.....(((((((((((...((((((............((((((((.((((........)))).))))))))............)))))).)).))).)))))))))..)))) (-20.49 = -21.55 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:09 2006