Locus 5120

Sequence ID 2R_DroMel_CAF1
Location 16,654,841 – 16,654,959
Length 118
Max. P 0.735110
window8186

overview

Window 6

Location 16,654,841 – 16,654,959
Length 118
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 81.81
Mean single sequence MFE -48.33
Consensus MFE -30.03
Energy contribution -31.78
Covariance contribution 1.75
Combinations/Pair 1.21
Mean z-score -2.22
Structure conservation index 0.62
SVM decision value 0.43
SVM RNA-class probability 0.735110
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16654841 118 - 20766785
CAAUGUUGCCAACGCUGGGACCACUUGGCUCCAGUGGUGGCAUCGAGAUUCCGCCGAGAGCUGCGACCAGUUUCUGGCGCAAGGCGCGCAAAUAGGUCUCCAGGCGUUGGUUCUCCUC
.......(((((((((((((((....(((((...((((((.((....)).)))))).)))))(((.((((...)))))))..............)))).))).))))))))....... ( -49.50)
>DroPse_CAF1 5361 118 - 1
CAAUGUUGCCAACGCUCGGACCGGACGGUUCCAGCGGAGGCAAUGGUACACCAUUGAGGGCUGCAACCAGCUUCUGGCGCAGACCCUUCACGUACGCCUCCAGUCGCAAAUUCUCCUC
.....((((..(((((.(((((....))))).)))(((((((((((....)))))(((((((((..((((...)))).)))).))))).......)))))).)).))))......... ( -49.10)
>DroSec_CAF1 3365 118 - 1
CAAUGUUGCCAACGCUGGGACCACUUGGCUCCAGUGGGGGCAUCGAGAUUCCCCCGAGGGCUGCGACCAGUUUCUGGCGCAAGGCGCGCACAUACGUCUCCAGGCGUUGGUUCUCCUC
.......(((((((((.(((......(((((...((((((.((....)).)))))).)))))(((.((((...)))))))..((((........))))))).)))))))))....... ( -48.00)
>DroEre_CAF1 3407 118 - 1
CAAUGUUGCCAACGCUGGGACCACUUGGCUCCAGAGAAGGCAGCGAGAUUCCACCGAGGGCUGCGACCAGUUUCUGGCGCAAGCCGCGCACAUAGGUCUCCAGGCGUUGGUUCUCCUC
....((((((..(.((((..((....))..)))).)..))))))((((....(((((.(.(((.((((.((.(.((((....)))).).))...))))..))).).)))))))))... ( -50.40)
>DroYak_CAF1 3402 118 - 1
CAAUGUUGCCAACGCUGGGACCACCUGGCUCCAGAGAAGGUAACGGGACUCCACCGAGGGCUGCGACCAGUUUUUGUCGCAAGCCGCUCACAUAGUUCUCCAGGCGUUGGUUCUCCUC
.......(((((((((((..((....))..)).((((((((...((....)))))((((((((((((........))))).)))).)))......)))))..)))))))))....... ( -46.60)
>DroPer_CAF1 5349 118 - 1
CAAUGUUGCCAACGCUCGGACCGGACGGUUCCAGCGGAGGCAAUGGGACACCAUUGAGGGCUGCAACCAACUUCUGGCGCAGACCUUUCACGUACGCCUCCAGUCGCACAUUCUCCUC
.(((((.((..(((((.(((((....))))).)))(((((((((((....)))))(((((((((..(((.....))).)))).))))).......)))))).)).)))))))...... ( -46.40)
>consensus
CAAUGUUGCCAACGCUGGGACCACUUGGCUCCAGAGGAGGCAACGAGACUCCACCGAGGGCUGCGACCAGUUUCUGGCGCAAGCCGCGCACAUACGUCUCCAGGCGUUGGUUCUCCUC
...(((((((..(((((((.((....)).)))))))..)))))))..........((((((((((.((((...)))))))...............(((....)))...)))))))... (-30.03 = -31.78 +   1.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:01 2006