Locus 5117

Sequence ID 2R_DroMel_CAF1
Location 16,649,052 – 16,649,146
Length 94
Max. P 0.865058
window8179

overview

Window 9

Location 16,649,052 – 16,649,146
Length 94
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 78.55
Mean single sequence MFE -18.11
Consensus MFE -13.30
Energy contribution -13.69
Covariance contribution 0.39
Combinations/Pair 1.22
Mean z-score -1.54
Structure conservation index 0.73
SVM decision value 0.84
SVM RNA-class probability 0.865058
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16649052 94 - 20766785
UCAAAACGGCAGCAGAAAUAAACAAGGUGCGAAUUUUGAAAGUG----ACUGAAAAUGUUAUUUAUCUCCCCCAUUGACAUUUUUCCA-----AUUUCUGCCC
...........((((((((...((((((....))))))......----...((((((((((..............))))))))))...-----)))))))).. ( -18.44)
>DroSec_CAF1 48208 82 - 1
-----------GCAGAAAUAAACAAGGUGCGAAUUUUGAAAGUG----ACAAAAAAUGUUAUUUAUC-CCCUCAUUGACAUUUUUCCA-----AUUUCUGCCC
-----------((((((((...((((((....))))))......----...((((((((((......-.......))))))))))...-----)))))))).. ( -18.02)
>DroSim_CAF1 48986 83 - 1
-----------GCAGAAAUAAACAAGGUGCGAAUUUUGAAAGUG----ACAGAAAAUGUUAUUUAUCUCCCUCAUUGACAUUUUUCCA-----AUUUCUGCCC
-----------((((((((....(((((((((.....(((((((----(((.....)))))))).)).......))).))))))....-----)))))))).. ( -18.60)
>DroEre_CAF1 51770 94 - 1
CCAAAGCGGCAGCAGAAACCAACAAGGUGCGAAUUUUGAAAGUG----ACUGAAAAUGUUAUUUAUCUCCCUCAUUGACAUUUUUCCA-----AUUUCUGCCC
.......((((((((..((...((((((....))))))...)).----.)))(((((((((..............)))))))))....-----....))))). ( -18.44)
>DroYak_CAF1 50019 94 - 1
CCAAAACGGCAGCAGAAACCAACAAGGUGCGAAUUUUGAAAGUG----ACUGAAAAUGUUAUUUAUCUCCCUCAUUGACAUUUUUCCC-----AUUUCUGCCC
.......(((((..........((((((....)))))).(((((----...((((((((((..............))))))))))..)-----))))))))). ( -18.64)
>DroAna_CAF1 50996 89 - 1
------------CUGGAAGAAAAAAGGUGCGAUUUUUGAAAGUGUUUGAUUGAAAA--UUGUUUAUCUGCUUCUCUAAUAUUUGGUCAAUGCCAUUCCAUUCC
------------.((((((((...((((((((((((..(..........)..))))--))))..))))..))).........((((....))))))))).... ( -16.50)
>consensus
___________GCAGAAAUAAACAAGGUGCGAAUUUUGAAAGUG____ACUGAAAAUGUUAUUUAUCUCCCUCAUUGACAUUUUUCCA_____AUUUCUGCCC
...........(((((((....((((((....)))))).............((((((((((..............)))))))))).........))))))).. (-13.30 = -13.69 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:55 2006