| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,644,667 – 16,644,771 |
| Length | 104 |
| Max. P | 0.764999 |
| Location | 16,644,667 – 16,644,771 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 73.08 |
| Mean single sequence MFE | -26.00 |
| Consensus MFE | -6.00 |
| Energy contribution | -7.28 |
| Covariance contribution | 1.28 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.55 |
| Structure conservation index | 0.23 |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.764999 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16644667 104 - 20766785 -UGUGAUUGGUGCUA-UUAGGUU-AAAAUGUUCGAACAAACCAUUAGUUGAACGUUUUAAGCACAAGAUAUCCAUACUUGAAUUUGACUAACUAGCGCCUAAAACAU -(((....(((((((-((((.((-(((((((((((..((....))..)))))))))))))...((((.........)))).......)))).)))))))....))). ( -27.90) >DroPse_CAF1 51351 94 - 1 CUGU-----AGGCCA-UUAAGUUGUAAAUGUUUAGCCAAAUCGUUGCU-GCUC----UA--CUAAAAAUUUCCGUAUUGGAGAUUAUUUGGCUACGAUUUAACACAG ((((-----.(((((-((........))))....)))(((((((.(((-(...----..--..((.(((((((.....))))))).)))))).)))))))...)))) ( -19.51) >DroSec_CAF1 43818 105 - 1 -UGUGAUUGGGGCUAAAUGAGUC-UAAAUGUUCGACCAAAUCAUUAGUUGAACGUUUUAAGCACAAGAUAUCCAUACUUGAAUUUGACUAACUAGCGCCUAAAACAU -(((..(((((((((....((((-.(((((((((((..........)))))))))))......((((.........)))).....))))...)))).))))).))). ( -26.50) >DroSim_CAF1 44329 104 - 1 -UGUGAUUGGCGCUA-UUAGGUU-UAAAUGUUCGACCAAAUCAUUAGUUGAACGUUUUAAGCACAAGAUAUCCAUACGUGAAUUUGACUAACUAGCGCCUAAAACAA -(((....(((((((-(((((((-((((((((((((..........)))))))).))))))).((((...(((....).)).)))).)))).)))))))....))). ( -29.70) >DroEre_CAF1 47153 104 - 1 -UGUGAUUGGGUCUA-UUAAGUU-UAAAUGUUCGACCAAACCAUUAGUUGAACGUUUAAAGCAAGGGGUAUCCAUAUUUAAAUUCGACUAGCUCCCGCCUAAAACGC -.((..((((((...-.....((-((((((((((((..........))))))))))))))....(((((.....................)).))))))))).)).. ( -23.30) >DroYak_CAF1 45415 99 - 1 -UGUGAUUGGGGCUA-UUAAGUU-GAAAUGUUCGACUAAACCAUUAGUUGAACGUUUAAAACAAGGGAUAUCCAUAUCUGUAACUGAAUAACUCCCGCCUCA----- -......((((((..-....(((-.((((((((((((((....))))))))))))))..)))..(((((((.((..........)).)))..))))))))))----- ( -29.10) >consensus _UGUGAUUGGGGCUA_UUAAGUU_UAAAUGUUCGACCAAACCAUUAGUUGAACGUUUUAAGCAAAAGAUAUCCAUACUUGAAUUUGACUAACUACCGCCUAAAACAU ....................((...(((((((((((.((....)).)))))))))))...))............................................. ( -6.00 = -7.28 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:53 2006