| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,641,187 – 16,641,279 |
| Length | 92 |
| Max. P | 0.908701 |
| Location | 16,641,187 – 16,641,279 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 77.17 |
| Mean single sequence MFE | -23.19 |
| Consensus MFE | -14.96 |
| Energy contribution | -17.04 |
| Covariance contribution | 2.09 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.64 |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.908701 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16641187 92 - 20766785 CUCUGGAUGUGUUUAUAUAUGUACAUAU---GUAUAACUGGGUUGGAGCAUGCACCUCGAAAGGGGUUAACGACGCAUGGUCUAAAAAAAAAAGU .((..(......(((((((((....)))---)))))))..))(((((.((((((((((....))))).......))))).))))).......... ( -25.01) >DroSec_CAF1 40477 90 - 1 CUCUGGAUGUGUUUAUAUAUGUACAUAU---GUAUAUCUGGGUUGGAGCAUGCACCUCUAAAGGGGUUAACGACGCAUGGUCUAAA--AAAACGU .((..((((((..(((........))).---.))))))..))(((((.((((((((((....))))).......))))).))))).--....... ( -25.51) >DroSim_CAF1 40952 91 - 1 CUCUGGAUGUGUUUAUAUGUGUACAUAU---GUAUAUCUGGGUUGGAGCAUGCACCUCAAAAGGGGUUAACGACGCAUGGUCUAAAA-AAAACGU .((..((((((..((((((....)))))---)))))))..))(((((.((((((((((....))))).......))))).)))))..-....... ( -28.41) >DroEre_CAF1 43648 76 - 1 CUCUGGAU----------GUUU----AU---AUAUAUCUGGGCUGGAGCAUGCACCUCCAAAGGGGUUAACGACGCAUGGUCUAAAA--AAAAGU .((..(((----------((..----..---..)))))..)).((((.((((((((((....))))).......))))).))))...--...... ( -22.11) >DroYak_CAF1 41901 85 - 1 CUCUGGAUGUGUGCAUAUGUUU----AU---AUAUAUCUGGGUUGGAGCAUGCACCUCCAAAGGGGUUAACGACGCAUGGUCUAAAA---AAAGU .((..((((((((.(......)----.)---)))))))..))(((((.((((((((((....))))).......))))).)))))..---..... ( -25.21) >DroPer_CAF1 47891 77 - 1 CUAU------GUUUA---GUAUACAUAUGGAGUACAACUGAG--GGGGCAUGCACCUUAAAAGGGGUUAACGAUGAGUGGUCUGG-------GGC ....------.((((---(..(((.(((.(...((..((.((--((........))))...))..))...).))).)))..))))-------).. ( -12.90) >consensus CUCUGGAUGUGUUUAUAUGUGUACAUAU___GUAUAUCUGGGUUGGAGCAUGCACCUCAAAAGGGGUUAACGACGCAUGGUCUAAAA__AAAAGU .((((((((((.....................))))))))))(((((.((((((((((....))))).......))))).))))).......... (-14.96 = -17.04 + 2.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:52 2006