| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,637,504 – 16,637,604 |
| Length | 100 |
| Max. P | 0.539732 |
| Location | 16,637,504 – 16,637,604 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 82.82 |
| Mean single sequence MFE | -36.90 |
| Consensus MFE | -26.20 |
| Energy contribution | -26.20 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.539732 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16637504 100 + 20766785 ACUGGGUCGCUCCAAAUAGCUGCCAUGUCCUGGCACGGGCAUUGACAUUGGCAUCUCAAGAUGCUGGUGGUGGUGAUUCAGCUGCGCUUGCUG------------UAGAUGC .(((((((((..(.......((((.(((....)))..))))....(((..(((((....)))))..))))..)))))))))(((((.....))------------))).... ( -37.60) >DroSec_CAF1 36799 100 + 1 ACUGGGUCGCUCCAAAUAGGUGCCAUGUCCUGGCAUGGGCAUUGACAUUGGCAUCUCCAGAUGCUGGUGGUGAUGAUUCAGCUGCGCCUGCUG------------UAAAUGC ..((((....))))..((((((((((((....)))))(((.....(((..(((((....)))))..))).(((....)))))))))))))...------------....... ( -35.50) >DroEre_CAF1 39919 100 + 1 ACUGGGUCGCUCCAAAUAGCUGCCAUGUCCUGGCAUGGGCAUUGACAUUGGCAUCUCUAGAUGUUGGUGGUGGUGGUUCAACUGCGCCUGCUG------------UAGAUGC ..((((....)))).((((((((((.....))))).((((.....(((..(((((....)))))..)))(..((......))..)))))))))------------)...... ( -36.10) >DroYak_CAF1 38170 100 + 1 ACUGGGUCGCUCCAAAUAGCUGCCAUGUCCCGGCAUGGGCAUUGACAUUGGCAUCUCAAGAUGUUGGUGGUGGUGGUUCAACUGCGUCUGCUG------------UAGAUGC ..((..((((..(.....((..((((((....)))))))).....(((..(((((....)))))..))))..))))..))...(((((((...------------))))))) ( -37.30) >DroAna_CAF1 40413 112 + 1 ACUGGGUCGCUCCAAGUAGCCACUACUUCCGGGCAUGGGCAUCGACAUUGGCAUUUCCAAUUGCUGGUGAUGAUGAUACAGCUUCUGCUGUUGCAGUGGCUGAUAUAAUUGU ........((((.((((((...))))))..)))).....(((((.(((..(((........)))..))).)))))...(((((.((((....)))).))))).......... ( -38.00) >consensus ACUGGGUCGCUCCAAAUAGCUGCCAUGUCCUGGCAUGGGCAUUGACAUUGGCAUCUCAAGAUGCUGGUGGUGGUGAUUCAGCUGCGCCUGCUG____________UAGAUGC ...(((.(((............((((((....)))))).((((..(((..(((((....)))))..)))..))))........))))))....................... (-26.20 = -26.20 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:51 2006