Locus 5112

Sequence ID 2R_DroMel_CAF1
Location 16,636,686 – 16,636,786
Length 100
Max. P 0.895009
window8174

overview

Window 4

Location 16,636,686 – 16,636,786
Length 100
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 77.06
Mean single sequence MFE -27.13
Consensus MFE -20.48
Energy contribution -20.29
Covariance contribution -0.19
Combinations/Pair 1.35
Mean z-score -1.41
Structure conservation index 0.75
SVM decision value 0.98
SVM RNA-class probability 0.895009
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16636686 100 + 20766785
GGGCCUGCGAUGCUUUUACUACCUGGUGCAGGAUCUCAAGUGCCUGGUCUUCUCACUCAUCGGCCUGCAUUUCAAGAUCAAGCCCAUAUAAG--CCGUAG----------CC--
.(((.((((..((((.((.....(((.((..(((((.((((((..((((............)))).))))))..)))))..))))))).)))--))))))----------))-- ( -30.70)
>DroPse_CAF1 41118 108 + 1
GGGCUUGCGCUGCUUCUAUUAUCUGGUGCAAGAUCUCAAGUGUUUGGUCUUCUCGCUCAUCGGCCUGCACUUCAAGAUCAAGCCCAUAUAAG--CUGCCC-ACUCUCAU-AU--
(((((((((((.............)))))))(((((.((((((..((((............)))).))))))..))))).(((........)--))))))-........-..-- ( -32.02)
>DroWil_CAF1 57085 109 + 1
AGGCUUGAGAUGCUUCUAUUAUCUAGUGCAGGAUCUUAAGUGUUUGGUCUUCUCACUCAUCGGUUUGCACUUCAAGAUCAAGCCCAUAUAGA--AGGCUUCUCUCACGU-AU--
..((.(((((.((((((((......(.((..(((((((((((((((((..........)))))...)))))).))))))..)))...)))))--).))...))))).))-..-- ( -26.90)
>DroMoj_CAF1 53741 102 + 1
AGGCUUGCGCUGCUUCUAUUAUUUGGUACAGGAUUUAAAGUGUCUGGUCUUCUCGCUCAUCGGUCUCCACUUCAAAAUUAAACCCAUAUAAAACU------------UCUCCGA
.(((....))).......((((.(((.....(((((.(((((.(((((..........)))))....)))))..)))))....))).))))....------------....... ( -12.40)
>DroAna_CAF1 39525 99 + 1
GGGACUGCGCUGCUUCUACUAUUUGGUGCAGGAUCUCAAGUGUUUGGUCUUCUCACUCAUUGGCCUGCAUUUCAAGAUCAAACCCAUAUAAGAACCG-------------AU--
(((.(((((((.............)))))))(((((.((((((..((((............)))).))))))..)))))...)))............-------------..-- ( -28.72)
>DroPer_CAF1 41681 108 + 1
GGGCUUGCGCUGCUUCUAUUAUCUGGUGCAAGAUCUCAAGUGUUUGGUCUUCUCGCUCAUCGGCCUGCACUUCAAGAUCAAGCCCAUAUAAG--CUGCCC-ACUCUCAU-AU--
(((((((((((.............)))))))(((((.((((((..((((............)))).))))))..))))).(((........)--))))))-........-..-- ( -32.02)
>consensus
GGGCUUGCGCUGCUUCUAUUAUCUGGUGCAGGAUCUCAAGUGUUUGGUCUUCUCACUCAUCGGCCUGCACUUCAAGAUCAAGCCCAUAUAAG__CCGC__________U_AU__
(((((((((((.............)))))))(((((.((((((..((((............)))).))))))..)))))..))))............................. (-20.48 = -20.29 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:50 2006