| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,630,736 – 16,630,827 |
| Length | 91 |
| Max. P | 0.586341 |
| Location | 16,630,736 – 16,630,827 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 80.31 |
| Mean single sequence MFE | -32.25 |
| Consensus MFE | -21.99 |
| Energy contribution | -22.02 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.586341 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16630736 91 - 20766785 G---------CC--AGCU---CACUCGCAGGCUAUUUUGCCAUCGAAACUACUGAGGGCAAUGGCGAAUGCCUGCAUGGCGCACAGGGGAUAGCGAUAGUCCAUG (---------((--(...---.....((((((...((((((((.(...((....))..).)))))))).)))))).)))).......((((.......))))... ( -30.60) >DroVir_CAF1 44646 100 - 1 GGAUAAGGACAU--GGUU---CACUCGCAGGCGAUUUUGCCAUCGAAACUGCUGAGCGCUAUGGCGAAGGCUUGCAUGGCGCAGAGCGGAUAGCGAUAGUCCAUG ......((((..--(((.---...(((....)))....)))((((...(((((..((((((((((....))...))))))))..)))))....)))).))))... ( -39.80) >DroGri_CAF1 30941 102 - 1 GGACAACGGCAUUGGGCU---CACUCGCAGGCGAUCUUGCCAUCGAAACUGCUGAGAGCGAUGGCAAAUGCUUGCAUCGCGCACAGUGGAUAGCGAUAGUCCAUA ((((...(((.....)))---.....(((((((...(((((((((...((....))..))))))))).)))))))(((((............))))).))))... ( -37.60) >DroWil_CAF1 50242 91 - 1 U---------AA--AGUU---CACUCGCAGGCAAUUUUGCCAUCGAAACUACUGAGAGCUAUCGCAAAGGCUUGCAUGGCACACAAAGGAUAACGAUAGUCCAUG .---------..--(((.---...(((..((((....))))..)))....)))....(((((.((((....))))))))).......((((.......))))... ( -21.00) >DroYak_CAF1 31438 94 - 1 G---------CC--AGCUCCUCACUCGCAGGCUAUUUUGCCAUCGAAACUGCUGAGUGCUAUGGCAAAGGCCUGCAUGGCGCACAGGGGAUAGCGAUAGUCCAUG .---------..--.(((((((....(((((((..((((((((....(((....)))...))))))))))))))).((.....)))))))..))........... ( -32.90) >DroAna_CAF1 33427 100 - 1 AGUUAUGGACCG--GGCU---CACUCACAGGCUAUUUUGCCAUCGAAACUGCUCAGGGCUAUGGCGAAGGCUUGCAUCGCGCACAGGGGAUAGCGAUAGUCCAUG ...(((((((.(--((..---..))).((((((..((((((((.(...((....))..).)))))))))))))).(((((............))))).))))))) ( -31.60) >consensus G_________AC__AGCU___CACUCGCAGGCUAUUUUGCCAUCGAAACUGCUGAGAGCUAUGGCAAAGGCUUGCAUGGCGCACAGGGGAUAGCGAUAGUCCAUG ..........................((((((...((((((((.(...((....))..).)))))))).))))))............((((.......))))... (-21.99 = -22.02 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:46 2006