Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,773,351 – 2,773,441 |
Length | 90 |
Max. P | 0.500000 |
Location | 2,773,351 – 2,773,441 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 82.19 |
Mean single sequence MFE | -27.47 |
Consensus MFE | -18.51 |
Energy contribution | -20.07 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.20 |
Mean z-score | -1.44 |
Structure conservation index | 0.67 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2773351 90 + 20766785 UCCAAGGUCGUGUCUGGCUUUAUUUUUAGCCCAGGCUGCUGGGAAUUUAUGGCCAUUGGCCUGUUCCGAUCGAGUGAAGGGACUUUGGGA (((((((((((((((((((........)).)))))).))..(((((....((((...)))).))))).............))))))))). ( -33.90) >DroSec_CAF1 14452 80 + 1 UCCAAGGUCGAGUCCGGCUUUAUUUUUAGCCCAGGCUGCUGGGAAUUUAUGGCCAUUGGCCCGGUCCGAUCGAGUGAAGG---------- ..((.(((((.(.(((.............(((((....))))).......((((...))))))).))))))...))....---------- ( -25.90) >DroSim_CAF1 28722 90 + 1 UCCAAGGUCGAGUCUGGCUUUAUUUUUAGCCCAGGCUGCUGGGAAUUUAUGGCCAUUGGCCCGUUCCGAUCGAGUGAAGGGACUUUGGGA (((((((((.(((((((((........)).)))))))....(((((....((((...)))).))))).............))))))))). ( -33.60) >DroEre_CAF1 11729 87 + 1 UUCAAGGUCGAGUCUGGCUUUAUUUUUAGCCCAGGCUGCUGCGAAUUUAUGGCCAUUGGCCCGGUCCGAUCGAGUGAAGGGCCCUUG--- ..((((((.((((((((((........)).))))))).).))........((((...)))).(((((..((....)).)))))))))--- ( -26.90) >DroYak_CAF1 11780 87 + 1 UUCAAGGUCGUGUCUGGUUUUAUUUUUAGCCCAGGCUGCUGGGAAUUUAUGGCCAUUGGCCCGAUCCGAUCGAGUGAAGGGUCUUUG--- ((((.(((((..((...............(((((....))))).......((((...)))).))..)))))...)))).........--- ( -25.00) >DroAna_CAF1 12302 77 + 1 UCCAAGGUUAAGGCUGGUUUUAUUUUUAGCC-UGGCUGCUGGGAAUUUAUGGCCCUUGCCCUUUUCUUUGCUUUCAAA------------ ..(((((..(((((.((((..(((((((((.-.....)))))))))....))))...).))))..)))))........------------ ( -19.50) >consensus UCCAAGGUCGAGUCUGGCUUUAUUUUUAGCCCAGGCUGCUGGGAAUUUAUGGCCAUUGGCCCGUUCCGAUCGAGUGAAGGG_CUUUG___ .....((((((...(((((..(((((((((.......)))))))))....))))))))))).(((((...........)))))....... (-18.51 = -20.07 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:34 2006