| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,624,263 – 16,624,354 |
| Length | 91 |
| Max. P | 0.947176 |
| Location | 16,624,263 – 16,624,354 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 70.34 |
| Mean single sequence MFE | -23.58 |
| Consensus MFE | -13.14 |
| Energy contribution | -15.30 |
| Covariance contribution | 2.16 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.56 |
| SVM decision value | 1.37 |
| SVM RNA-class probability | 0.947176 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16624263 91 + 20766785 AAUGAAAUUUGUCAAUGUUCGUUUGUGUUUUUGUUGGCUGUCGGCUUUUUGGCAUGCG--GAAGCUGACUUGAGCCGCUGUAAUACGUGCAUA ....................((.((((((...((.((((((((((((((........)--)))))))))...))))))...)))))).))... ( -24.40) >DroGri_CAF1 23403 76 + 1 C-----AUUUUUCAUUGCGCGUUUG-----------CUUUUCGAUGUUUUGGCUG-CCGCCUCGCACACUUAAUCCGGCAUAAUACGUGAAUA .-----...........(((((.((-----------((..(..((((...(((..-..)))....))).)..)...))))....))))).... ( -13.00) >DroSec_CAF1 23956 79 + 1 A------------AGUUUUCGUUUGUAUUUUUGUUGGCUGUCGGCUUUUUGGCAUGCG--GAAGCUGACUUGAGCCGCUGUAAUACGUGCAUA .------------.......((.((((((...((.((((((((((((((........)--)))))))))...))))))...)))))).))... ( -24.40) >DroSim_CAF1 23581 84 + 1 UAUGAAAUUUGUCAAUUUCCGUUUGUGUUUUUGUUGGCUGUCGGCUUUUUG---------GAAGCUGACUUGAGCCGCUGUAAUACGUGCAUA ...((((((....)))))).((.((((((...((.(((((((((((((...---------)))))))))...))))))...)))))).))... ( -24.70) >DroEre_CAF1 26737 91 + 1 CAUGUAAUUUGGACAUUUUUGCGCAUGUGUUUGUUGGCUGUCGGCUUUUUGGCAUGCG--GAAGCUGACUUAAGCCGCUGUAAUACGUGCAUA ...((((...........))))(((((((((.((.((((((((((((((........)--)))))))))...))))))...)))))))))... ( -30.40) >DroYak_CAF1 24875 91 + 1 AACGAAAAUUUGAAAUUUUUGCACAUGUUUUUGUUGGCUGUCGGUUUUUUGGCAUGCG--GAAGCUGACUUAAGCCGCUGUAAUACGUGCAUA ...................(((((.((((...((.((((((((((((((........)--)))))))))...))))))...)))).))))).. ( -24.60) >consensus AAUGAAAUUUGUCAAUUUUCGUUUGUGUUUUUGUUGGCUGUCGGCUUUUUGGCAUGCG__GAAGCUGACUUAAGCCGCUGUAAUACGUGCAUA ....................((.((((((...((.(((((((((((((...(....)...)))))))))...))))))...)))))).))... (-13.14 = -15.30 + 2.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:45 2006