Locus 5108

Sequence ID 2R_DroMel_CAF1
Location 16,615,919 – 16,616,011
Length 92
Max. P 0.528405
window8168

overview

Window 8

Location 16,615,919 – 16,616,011
Length 92
Sequences 4
Columns 108
Reading direction forward
Mean pairwise identity 83.33
Mean single sequence MFE -21.84
Consensus MFE -14.14
Energy contribution -14.45
Covariance contribution 0.31
Combinations/Pair 1.06
Mean z-score -1.62
Structure conservation index 0.65
SVM decision value -0.01
SVM RNA-class probability 0.528405
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16615919 92 + 20766785
UUUGAAUCUCCUGUGGCUUUCUGCCUUUUUUCCACUGGCUGGCCAUGAU----------------UUGGCUUAAAACUCCGCUUAAUUACAAUUUCAGCGCCAUUUUC
..............(((.....)))..........((((.(((((....----------------.))))).........(((.((.......)).)))))))..... ( -18.30)
>DroSec_CAF1 15754 107 + 1
U-UGAAUCUCCUGUGGCUUACUGUCUUUUUUCCAAUCGCUGGCCAUGAUUGCUUAUCCGACACAUUUGGCUUAAAGCUCCGCUUAAUUACAAUUUCAGCGCCAUUUUU
.-..........(((((....................((((((((....(((......).))....)))))...)))...(((.((.......)).)))))))).... ( -17.20)
>DroSim_CAF1 15367 108 + 1
UUUGAAUCUCCUGUGGCUUACUGUCUUUUUUCCACUCGCUGGCCAUGAUUGCUUAUCCGACGCAUUUGGCUUAAAGCUCCGCUUAAUUACAAUUUCAGCGCCAUUUUU
............(((((....................((((((((....(((.........)))..)))))...)))...(((.((.......)).)))))))).... ( -20.00)
>DroYak_CAF1 16149 108 + 1
UUUGAAUCUCUUGUGGCUUUCCGGCUUUUUGCCACUGGCUGGCCAGGAUUGCUUAUCCGCUGUAUUCGGCUUUAAGCUUUGCUUAAUUACAAUUUCAGCGCCACUUUU
............(((((.....((((....(((...))).)))).((((.....))))((((.........((((((...)))))).........))))))))).... ( -31.87)
>consensus
UUUGAAUCUCCUGUGGCUUACUGUCUUUUUUCCACUCGCUGGCCAUGAUUGCUUAUCCGACGCAUUUGGCUUAAAGCUCCGCUUAAUUACAAUUUCAGCGCCAUUUUU
............(((((....................((((((((.....................)))))...)))...(((.((.......)).)))))))).... (-14.14 = -14.45 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:44 2006