Locus 5104

Sequence ID 2R_DroMel_CAF1
Location 16,602,328 – 16,602,418
Length 90
Max. P 0.946652
window8160

overview

Window 0

Location 16,602,328 – 16,602,418
Length 90
Sequences 6
Columns 91
Reading direction forward
Mean pairwise identity 79.61
Mean single sequence MFE -25.57
Consensus MFE -11.20
Energy contribution -12.90
Covariance contribution 1.70
Combinations/Pair 1.23
Mean z-score -3.25
Structure conservation index 0.44
SVM decision value 1.36
SVM RNA-class probability 0.946652
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16602328 90 + 20766785
ACAAUUUGCUGCCUUGUAAACAG-GAUGGCAAAUUGUGCUGAGUGCUGAGUGCAUUCGGUAUAAUCAACUUGUCAAAAUUGGCACAGAUAU
((((((((((..((((....)))-)..))))))))))(((((((((.....)))))))))........(((((((....))))).)).... ( -33.10)
>DroPse_CAF1 5044 76 + 1
AGGGGAUGG-----AGUGAACCGAAAUUGCGAAUA-UUAUG-------AGUGUUCCGAGUGCAAUCAAGUUGUCAAAAUUGGCACAAAA--
......(((-----......)))...(((.(((((-(....-------.)))))))))((((.....((((.....)))).))))....-- ( -11.70)
>DroSec_CAF1 2295 90 + 1
ACAAUUUGCUGCCUUGUAAACAG-GAUGGCGAAUUGUGCUGAGUGCUCAGUGCAUUCAGUAUAAUCAACUUGUCAAAAUUGGCACAGAUAU
((((((((((..((((....)))-)..))))))))))(((((((((.....)))))))))........(((((((....))))).)).... ( -33.50)
>DroSim_CAF1 2308 90 + 1
ACAAUUUGCUGCCUUGUAAACAG-GAUGGCGAAUUGUGCUGAGUGCUGAGUGCAUUCAGUAUAAUCAACUUGUCAAAAUUGGCACAGAUAU
((((((((((..((((....)))-)..))))))))))(((((((((.....)))))))))........(((((((....))))).)).... ( -33.50)
>DroEre_CAF1 3924 83 + 1
ACAAUUUGCUGCCUUGUAAACAG-GAUGGCAAAUUGUGCUG-------AGUGCAUUCAAUAUAAUCAACUUGUCAAAAUUGGCACAGAUAU
((((((((((..((((....)))-)..))))))))))((..-------...))...............(((((((....))))).)).... ( -21.90)
>DroYak_CAF1 2319 83 + 1
ACAAUUUGCUGCCUUGUAAACAG-GAUGGCAAACUCAACUG-------AGUGCAUUCAGCAUAAUCAACUUGUCAAAAUUGGCACAGAUAU
....((((((..((((....)))-)..)))))).....(((-------.((((.....))))........(((((....)))))))).... ( -19.70)
>consensus
ACAAUUUGCUGCCUUGUAAACAG_GAUGGCAAAUUGUGCUG_______AGUGCAUUCAGUAUAAUCAACUUGUCAAAAUUGGCACAGAUAU
((((((((((..((((....))).)..)))))))))).(((........((((.....))))........(((((....)))))))).... (-11.20 = -12.90 +   1.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:37 2006