Locus 5101

Sequence ID 2R_DroMel_CAF1
Location 16,593,373 – 16,593,493
Length 120
Max. P 0.576873
window8155

overview

Window 5

Location 16,593,373 – 16,593,493
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.06
Mean single sequence MFE -42.13
Consensus MFE -22.93
Energy contribution -23.35
Covariance contribution 0.42
Combinations/Pair 1.22
Mean z-score -1.93
Structure conservation index 0.54
SVM decision value 0.09
SVM RNA-class probability 0.576873
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16593373 120 + 20766785
GUUCGGUUUUAUUCCAAACGGCGGUCGAGUCUACUACCACGGUCGCUCCCAGCCGCCACUUCUAACCGGUAUGGUCAAGUCGUACGUGGACUUCACCAACGAUGACAAGUUCGCCAUCGA
(((.((.......)).)))((((((.((((((((......(((.((.....)).)))...........((((((.....)))))))))))))).)))...((........)))))..... ( -35.10)
>DroVir_CAF1 554 120 + 1
CAUCGGAUUCAUACCGAACGGCGGCCGUGUCUACUAUUGGGGUCGUUCUCAGCCGCCGCUGCUAACGGCAAUGGUUAAGUCAUAUGUGGAUUUCACAAAGGACGAUCUGUUCGCCAUCAA
..((((.......))))..((((..((.(((.((((((...((((((..((((....))))..))))))))))))...(((...((((.....))))...)))))).))..))))..... ( -38.00)
>DroPse_CAF1 8715 120 + 1
GAUCGGCUUCAUUCCGAAUGGCGGACGAGUCUACUACUGGGGCCGCUCCCAGCCCCCGCUGCUGACCGGCAUGGUCAAAUCGUACGUGGACUUCACCAAGGACGAUCUGUUCGCCAUCAA
..((((.......))))((((((((((((((((((((.(((((........)))))......(((((.....)))))....))).))))))))......((.....)))))))))))... ( -44.00)
>DroGri_CAF1 551 120 + 1
GAUCGGAUUUAUUCCGAAUGGCGGUCGUGUCUACUACGGAGGACGCUCACAGCCACCACUCCUAACGGCAAUGGUGAAGUCAUAUGUCGACUUCACCAAGGAUGACAUGUUUGCCAUUAA
..(((((.....)))))(((((((.((((((..((..((((...((.....)).....)))).........((((((((((.......))))))))))))...)))))).)))))))... ( -46.70)
>DroMoj_CAF1 557 120 + 1
CAUUGGAUUCAUACCGAACGGUGGUCGCGUCUACUACUGGGGUCGCUCCCAGCCGCCGCUACUGGCGGGCAUGGUCAAGUCCUAUGUGGACUUCACCAAGGACGAUCGCUUUGCCAUCAA
..((((.......))))..(((((((((((((....((((((....))))))((((((....))))))...((((.((((((.....)))))).)))).)))))..))....)))))).. ( -46.30)
>DroAna_CAF1 596 120 + 1
UGUCGGAUACAUUCCGAAUGGAGGACGCGUCUACUACUACGGACGAUCCCAGCCACCGCUACUCACUGCCAUGGUCAAGUCGUACGUGGACUUCACCAACGACGACGUGUUCGCCAUCAA
..(((((.....)))))((((.(((((((((.....(((((.(((((....((((..((........))..))))...))))).)))))...((......)).))))))))).))))... ( -42.70)
>consensus
GAUCGGAUUCAUUCCGAACGGCGGUCGAGUCUACUACUGGGGUCGCUCCCAGCCGCCGCUACUAACGGCCAUGGUCAAGUCGUACGUGGACUUCACCAAGGACGACCUGUUCGCCAUCAA
..((((.......))))..(((((.((.(((.........((..((.....))..))..............((((.(((((.......))))).)))).....))).)).)))))..... (-22.93 = -23.35 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:32 2006