| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,770,943 – 2,771,038 |
| Length | 95 |
| Max. P | 0.731784 |
| Location | 2,770,943 – 2,771,038 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 78.89 |
| Mean single sequence MFE | -40.80 |
| Consensus MFE | -25.53 |
| Energy contribution | -26.45 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.731784 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2770943 95 + 20766785 UGGCCAGACGCAGCUGCUCCAGGGCGAUCUCGUGGGCGCGGAAGUGCUCCCGGGUGGCUUUGUCCAGUUCACUGGACGACGUGGAGCUGUAUGUG-- ........((((((.((((((.(((.(((.((.((((((....)))))).))))).)).((((((((....))))))))).)))))).)).))))-- ( -48.60) >DroVir_CAF1 28540 97 + 1 UGGCCAGACGCAGCUGCUCCAAGGCAAUCUCAUGCGCUUUUAAGUGCUCGCGUGUCGCCUGCUCCAGUUCGCUGAGCCCGGUGGAGCUCUUUAUGGU ..((((.....((((.(.((.((((.....(((((((........))..)))))..))))((((.((....))))))..)).).)))).....)))) ( -31.90) >DroSim_CAF1 24310 95 + 1 UGGCCAGACGCAGCUGCUCCAGGGCGAUCUCGUGGGCCCGGAAGUGCUCCCGGGUGGCUUUGUCCAGUUCACUGGACGACGUGGAGCUGUAAGUG-- ........(((.((.((((((.(((.(((.((.((((.(....).)))).))))).)).((((((((....))))))))).)))))).))..)))-- ( -42.10) >DroEre_CAF1 9364 95 + 1 UGGCCAGGCGCAGCUGCUCCAAGGCGAUUUCGUGGGCCCGGAAGUGCUCCCGGGUAGCCUUGUCCAGUUCACUGGGGGACGUAGCGGUGUAAGUG-- ..((...((((.(((((((((((((...((((.((((.(....).)))).))))..))))).(((((....)))))))).))))).))))..)).-- ( -42.10) >DroWil_CAF1 41017 91 + 1 UGGCCAAACGUAGCUGUUCCAGGGCAAUCUCAUGGGCACGGAAAUGCUCACGAGUGGCCUUUUCCAGUUCGCUGGAUGAACUGG---CAAGCGG--- ............(((...(((((((...(((.((((((......)))))).)))..)))...(((((....)))))....))))---..)))..--- ( -33.70) >DroYak_CAF1 9437 95 + 1 UGGCCAGUCGUAGCUGCUCCAGGGCGAUCUCGUGGGCGCGGAAGUGCUCCCGGGUGGCUUUCUCCAGUUCACUGGGGGACGUGGAGCUGUAACUA-- .........((.((.((((((.(((.(((.((.((((((....)))))).))))).)).((((((((....))))))))).)))))).)).))..-- ( -46.40) >consensus UGGCCAGACGCAGCUGCUCCAGGGCGAUCUCGUGGGCCCGGAAGUGCUCCCGGGUGGCCUUGUCCAGUUCACUGGACGACGUGGAGCUGUAAGUG__ .(((........)))((((((((((...((((.((((.(....).)))).))))..))))..(((((....))))).....)))))).......... (-25.53 = -26.45 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:33 2006