Locus 5097

Sequence ID 2R_DroMel_CAF1
Location 16,572,193 – 16,572,297
Length 104
Max. P 0.657439
window8148

overview

Window 8

Location 16,572,193 – 16,572,297
Length 104
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 79.22
Mean single sequence MFE -26.12
Consensus MFE -18.65
Energy contribution -19.18
Covariance contribution 0.53
Combinations/Pair 1.28
Mean z-score -1.23
Structure conservation index 0.71
SVM decision value 0.26
SVM RNA-class probability 0.657439
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16572193 104 - 20766785
----------AAACAUAUCUGCAGAUAAUGUGUUUUGUCAAUAUGAUUUGGGAUCCUACUACUACAAAGGACGCAGUCAAUUCUUUGAGUGGCACUUGGACUCCAGGCUAUGCA
----------...(((((..(((((........)))))..))))).(((((..(((..(((((.(((((((.........)))))))))))).....)))..)))))....... ( -26.10)
>DroSec_CAF1 6726 104 - 1
----------AAAAAUAUCUGCAGAUAAUGUGUUUUGUCAAUAUGAUUUGGGCUCCUACUACUACAAAGGACGCAGUCAAUUCUUUGAGUGGCACUUGGACUCCAGACUGUGCA
----------..........((((((((......))))).......(((((..(((..(((((.(((((((.........)))))))))))).....)))..)))))...))). ( -25.10)
>DroSim_CAF1 6421 104 - 1
----------AAAUAUAUCUGCAGAUAAUGUGUUUUGUCAAUAUGAUUUGGGCUCCUACUACUACAAAGGACGCAGUCAAUUCUUUGAGUGGCACUUGGACUCCAGACUGUGCA
----------..........((((((((......))))).......(((((..(((..(((((.(((((((.........)))))))))))).....)))..)))))...))). ( -25.10)
>DroEre_CAF1 6538 107 - 1
UUU-------UAACAUUCCUGCAGAUAAUGUCUUUUGUCAAUAUGAUUUGGCCUCCUACUAUUACAAAGGACGCAGCCAAUUCUUUGAGUGGCACUUGGACUCCAGACUGUGCA
...-------...(((((.....(((((......))))).....((.(((((.((((..........))))....))))).))...)))))((((((((...))))...)))). ( -23.70)
>DroYak_CAF1 6592 114 - 1
CUUUGAAUGUUGUUAUUCCUGCAGAUAAUAUCUUUUGUCAGUAUGAUUUGGCCUCCUACUACUACAAAGGACGCAGCCAGUUCUUUGAGUGGCACUUGGACUCCAGACUGUGCA
....(((((....))))).....(((((......))))).((((..(((((..(((..(((((.((((((((.......))))))))))))).....)))..)))))..)))). ( -32.50)
>DroAna_CAF1 6584 104 - 1
----------AAGUUUUUUUCUAGAUAAUAUAUUUUGCCAAUACGACGUGGGUUCCAUUGCCUACAAGAAUGAGAGUCAAGUGUAUCCCUGGUACAUAGACACCAGGAUGUGCA
----------...((((.((((............(((......))).((((((......)))))).)))).)))).....(..(((((.((((........)))))))))..). ( -24.20)
>consensus
__________AAAUAUAUCUGCAGAUAAUGUGUUUUGUCAAUAUGAUUUGGGCUCCUACUACUACAAAGGACGCAGUCAAUUCUUUGAGUGGCACUUGGACUCCAGACUGUGCA
...................(((((((((......))))).......(((((..(((..(((((.(((((((.........)))))))))))).....)))..)))))...)))) (-18.65 = -19.18 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:26 2006