Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 16,555,119 – 16,555,218 |
Length | 99 |
Max. P | 0.844452 |
Location | 16,555,119 – 16,555,218 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 92.02 |
Mean single sequence MFE | -29.36 |
Consensus MFE | -24.62 |
Energy contribution | -24.62 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.07 |
Mean z-score | -1.55 |
Structure conservation index | 0.84 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.844452 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16555119 99 + 20766785 UUCUGCC------UCUGUUUCUGCAGAACACGACGAGGGAGUUGUUCGAUUCGUGCGUGACAGAAAGAGUUGUGCUGAGUUGAGUAGAUUUCGAGUUGAGUGGUU ....(((------(((((....)))))((.((((..(..(.((((((((((((.(((..((.......))..))))))))))))))).)..)..)))).))))). ( -31.80) >DroSec_CAF1 21709 97 + 1 UUCUGUC------UCUGCUUCUGCAGAA--CGACGAGGGAGUUGUUCGAUUCGUGCGUGACAGAAAGAGUUGUGCUGAGUUGAGUAGAUUUCGAGUUGAGUGGUU .......------(((((....))))).--((((..(..(.((((((((((((.(((..((.......))..))))))))))))))).)..)..))))....... ( -31.00) >DroSim_CAF1 24883 97 + 1 UUCUGUC------UCUGUUUCUGCAGAA--CGACGAGGGAGUUGUUCGAUUCGUGCGUGACAGCAAGAGUUGUGCUGAGUUGAGUAGAUUUCGAGUUGAGUGAUU (((...(------((.(..(((((.(((--((((......)))))))((((((.(((..((.......))..)))))))))..)))))..).)))..)))..... ( -30.40) >DroEre_CAF1 21826 97 + 1 UUCUGUC------UCUGUUUCUGCAGAA--AGACGAGGGAGUUGUUCGCUUCGUGCGUGACAGAAAGAGUUGUGUUGAGUUGAGUAGAUUUCGAGCUGAGUGGAU (((((((------(((((....))))).--..((((.(((((.....))))).).)))))))))).........((.(((((((.....))).)))).))..... ( -23.70) >DroYak_CAF1 22964 103 + 1 UUCUGUCGCUGUUUCUGUUUCUGCAGAA--AGACGAGGGAGUUCUUCGAUUCGUGCGUGACAGAAAGAGUUGUGUUGAGUUGAGUAGAUUUCGAGCUGAGUGGAU .(((.(((.(.(((((((....))))))--).)))).)))(((((((((((((.(((..((.......))..))))))))))))..(....)))))......... ( -29.90) >consensus UUCUGUC______UCUGUUUCUGCAGAA__CGACGAGGGAGUUGUUCGAUUCGUGCGUGACAGAAAGAGUUGUGCUGAGUUGAGUAGAUUUCGAGUUGAGUGGUU (((.(((......(((((....)))))....))))))((((((..((((((((.(((..((.......))..)))))))))))...))))))............. (-24.62 = -24.62 + -0.00)
Location | 16,555,119 – 16,555,218 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 92.02 |
Mean single sequence MFE | -17.02 |
Consensus MFE | -12.26 |
Energy contribution | -12.30 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.06 |
Mean z-score | -1.98 |
Structure conservation index | 0.72 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.540161 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16555119 99 - 20766785 AACCACUCAACUCGAAAUCUACUCAACUCAGCACAACUCUUUCUGUCACGCACGAAUCGAACAACUCCCUCGUCGUGUUCUGCAGAAACAGA------GGCAGAA ..............................((....((.(((((((...((((((..(((.........)))))))))...))))))).)).------.)).... ( -18.50) >DroSec_CAF1 21709 97 - 1 AACCACUCAACUCGAAAUCUACUCAACUCAGCACAACUCUUUCUGUCACGCACGAAUCGAACAACUCCCUCGUCG--UUCUGCAGAAGCAGA------GACAGAA ........................................((((((((((.((((...((.....))..))))))--)(((((....)))))------))))))) ( -19.90) >DroSim_CAF1 24883 97 - 1 AAUCACUCAACUCGAAAUCUACUCAACUCAGCACAACUCUUGCUGUCACGCACGAAUCGAACAACUCCCUCGUCG--UUCUGCAGAAACAGA------GACAGAA ..........(((....(((........(((((.......)))))....(((.(((((((.........)))..)--)))))))))....))------)...... ( -15.40) >DroEre_CAF1 21826 97 - 1 AUCCACUCAGCUCGAAAUCUACUCAACUCAACACAACUCUUUCUGUCACGCACGAAGCGAACAACUCCCUCGUCU--UUCUGCAGAAACAGA------GACAGAA ....................................((.(((((((..((((.(((((((.........))).))--)).))).)..)))))------)).)).. ( -16.20) >DroYak_CAF1 22964 103 - 1 AUCCACUCAGCUCGAAAUCUACUCAACUCAACACAACUCUUUCUGUCACGCACGAAUCGAAGAACUCCCUCGUCU--UUCUGCAGAAACAGAAACAGCGACAGAA ........................................(((((((.((.((((...((.....))..)))))(--(((((......))))))..).))))))) ( -15.10) >consensus AACCACUCAACUCGAAAUCUACUCAACUCAGCACAACUCUUUCUGUCACGCACGAAUCGAACAACUCCCUCGUCG__UUCUGCAGAAACAGA______GACAGAA ........................................(((((((..(.((((...((.....))..)))))....((((......))))......))))))) (-12.26 = -12.30 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:22 2006