Locus 5092

Sequence ID 2R_DroMel_CAF1
Location 16,547,072 – 16,547,174
Length 102
Max. P 0.997053
window8140

overview

Window 0

Location 16,547,072 – 16,547,174
Length 102
Sequences 3
Columns 119
Reading direction forward
Mean pairwise identity 73.60
Mean single sequence MFE -32.97
Consensus MFE -22.60
Energy contribution -23.50
Covariance contribution 0.90
Combinations/Pair 1.24
Mean z-score -2.06
Structure conservation index 0.69
SVM decision value 2.79
SVM RNA-class probability 0.997053
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16547072 102 + 20766785
GCAUUACCUCUAU-AAAAUCAAAU-UGGU---------------CGGGCUAUAUAAAUGAUAUAUACCCCUCGCUGCCAUUUGUGCAGGGUAUCAAAAGUGGAGGACUGACGAAACCAA
......(((((((-..........-....---------------.(((.((((((.....)))))).))).(.(((((....).)))).)........))))))).............. ( -23.30)
>DroEre_CAF1 14088 117 + 1
CCAUUACCUCCAU-AAAAUGUAGCUUUGUUUAGAACGUUUACAAGGUGCGACGUAAGUGAAGUAUACCCCUCAUCG-GAUUGGUGCAGGGUAUCAAGAGUGGAGGGCUGGCGAGGCCAA
......(((((((-...((((.(((((((...........)))))))...)))).......(.((((((..((((.-....))))..)))))))....)))))))..((((...)))). ( -35.10)
>DroYak_CAF1 14373 119 + 1
CCAUUACCUCUAUUAAAAUGUAGCUUUUUUUAUAACUUUUACAAGGGGCUACAUAAAUGAAGUAUACCCCUCACUGCCAUCGGUGCAGGGUAUGAAAAGUGGAGGGCUGGCGAAGCCAA
......((((((((...((((((((((((.((.......)).))))))))))))........(((((((..(((((....)))))..)))))))...))))))))..((((...)))). ( -40.50)
>consensus
CCAUUACCUCUAU_AAAAUGUAGCUUUGUUUA_AAC_UUUACAAGGGGCUACAUAAAUGAAGUAUACCCCUCACUGCCAUUGGUGCAGGGUAUCAAAAGUGGAGGGCUGGCGAAGCCAA
......(((((((....(((((((.......................))))))).........((((((..(((((....)))))..)))))).....)))))))..((((...)))). (-22.60 = -23.50 +   0.90)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:18 2006