Locus 5091

Sequence ID 2R_DroMel_CAF1
Location 16,546,143 – 16,546,240
Length 97
Max. P 0.993366
window8139

overview

Window 9

Location 16,546,143 – 16,546,240
Length 97
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 70.46
Mean single sequence MFE -36.54
Consensus MFE -11.26
Energy contribution -15.82
Covariance contribution 4.56
Combinations/Pair 1.17
Mean z-score -2.48
Structure conservation index 0.31
SVM decision value 2.39
SVM RNA-class probability 0.993366
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16546143 97 - 20766785
-UCGCGGUACUCCUAUGAUUGACAGCUGC--CCCGAUCCGAGGCAGUUGCUCUGCAUCAGCAUUUUGUGGAGUAGGAGUCUGCAUUCGGGGAACC-GAAGU
-..((((.(((((((.......(((((((--(.((...)).))))))))(((..((.........))..)))))))))))))).(((((....))-))).. ( -44.40)
>DroSec_CAF1 13089 99 - 1
-UCGCGGCACUCCUAUGAUUGACAGCUGCUGCCCGAUCCGAGGCAGUUGCUCUGCAUCAGCAUUCUGGGGAGUAGGAGUUUGCAUUCGGGGAACC-GAAGU
-..((((.((((((((...((..(((.((((((((...)).)))))).)))...))((((....))))...)))))))))))).(((((....))-))).. ( -39.10)
>DroEre_CAF1 13215 96 - 1
-CCGCGGUACUCCUAUGAUUGACAGCUGC--CCCGAUCCGCGGCAGUUCCUCUGCAUCAGCACUUUGGGGAGUAGGAA-CCGCAUUCGGGGAACC-GAAGU
-..(((((..((((((........(((((--(.((...)).))))))((((((((....)))....))))))))))))-)))).(((((....))-))).. ( -40.40)
>DroYak_CAF1 13402 91 - 1
-CCGCGGUGCUUCUAUGAUUGACAGCUGC--CCCGAUCCGAGGCAGUCCCUCUGCAUCAGCAUUUUGGGGAGU------CUGCAUUCGGGGAACC-GAAGU
-...(((((((((.......)).)))..(--(((((......(((((((((.(((....)))....)))))..------))))..)))))).)))-).... ( -32.30)
>DroAna_CAF1 13122 79 - 1
CUUCUGGGAUCACUUUGAUUGACAGCUGG--C---------------UGCUCCAGACCCUAUUUCUG--G---AGGAGUCUUUUCUCUCGAUCCCUCCGGU
.....((((((...(((.....)))..((--(---------------(.(((((((.......))))--)---)).)))).........))))))...... ( -26.50)
>consensus
_UCGCGGUACUCCUAUGAUUGACAGCUGC__CCCGAUCCGAGGCAGUUGCUCUGCAUCAGCAUUUUGGGGAGUAGGAGUCUGCAUUCGGGGAACC_GAAGU
...((((.((((((((....(((((((((.............))))))).))(((....))).........)))))))))))).(((((....)).))).. (-11.26 = -15.82 +   4.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:17 2006