Locus 5090

Sequence ID 2R_DroMel_CAF1
Location 16,545,141 – 16,545,254
Length 113
Max. P 0.939195
window8138

overview

Window 8

Location 16,545,141 – 16,545,254
Length 113
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 61.13
Mean single sequence MFE -24.55
Consensus MFE -10.19
Energy contribution -10.53
Covariance contribution 0.34
Combinations/Pair 1.27
Mean z-score -2.34
Structure conservation index 0.42
SVM decision value 1.28
SVM RNA-class probability 0.939195
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16545141 113 - 20766785
AAGAGACACAAGCCCCCCCCCCCUCCCAUUCCCCUCAUGCCACAUAAAUUAGCUACAACUUUCAUUGCCAACA-AACAAGUAGUAAGUAUAUACAUGUAUGGGGCGAA----UAAA--GC
...........................((((.((((((((...(((.(((.(((((.................-.....))))).))).)))....)))))))).)))----)...--.. ( -17.85)
>DroPse_CAF1 11123 97 - 1
AAA-GGC--------------AGCC---AUCUAGUUGUGUCACAUAAAUAAGUUACAGCUUUCAUGGCUCUCAAAACAAGCUGAGAGCUAAA----GAA-GGGGCCUACGAGAAGAGGAA
..(-(((--------------..((---.((((((((((..((........)))))))))....(((((((((........))))))))).)----)).-)).))))............. ( -28.80)
>DroPer_CAF1 11173 97 - 1
AAA-GGC--------------AGCC---AUCUAGUUGUGUCACAUAAAUAAGUUCCAGCUUUCAUGGCUCUCAAAACAAGCUGAGAGCUAAU----GAA-GGGGCCUACAAGAAGAGGAA
..(-(((--------------..((---....(((((.(..((........)).))))))(((((((((((((........)))))))).))----)))-)).))))............. ( -27.00)
>consensus
AAA_GGC______________AGCC___AUCUAGUUGUGUCACAUAAAUAAGUUACAGCUUUCAUGGCUCUCAAAACAAGCUGAGAGCUAAU____GAA_GGGGCCUAC_AGAAGAGGAA
......................................(((........(((......)))...(((((((((........)))))))))............)))............... (-10.19 = -10.53 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:16 2006