Locus 509

Sequence ID 2R_DroMel_CAF1
Location 2,768,856 – 2,768,949
Length 93
Max. P 0.632141
window966

overview

Window 6

Location 2,768,856 – 2,768,949
Length 93
Sequences 3
Columns 111
Reading direction reverse
Mean pairwise identity 81.33
Mean single sequence MFE -24.49
Consensus MFE -20.67
Energy contribution -20.01
Covariance contribution -0.66
Combinations/Pair 1.11
Mean z-score -1.28
Structure conservation index 0.84
SVM decision value 0.20
SVM RNA-class probability 0.632141
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2768856 93 - 20766785
CUGGUCAUAU--GUAUAAUUUUUUGGAUUAGCUCGGUUAGUUUAUGAUGGCCAGUUCCGGGAAUCAUGCCCUUGAUUCAUCUGCUUUGGACUCCA----------------
((((((((..--...........(((((((((...)))))))))..))))))))....((((((((......)))))).(((.....)))..)).---------------- ( -21.56)
>DroSec_CAF1 9972 90 - 1
CUGGUUAUAUGUGCAUAAUUAUUUGGAUUAGCUCG-CUAGUUCAUGAUGGCCAGUUCCGGGAAUCAUGCCUUUGAUUCAUCUGCUUUGGAC--------------------
((((.....((.((...((((..((((((((....-)))))))))))).))))...))))((((((......)))))).............-------------------- ( -22.70)
>DroSim_CAF1 22195 110 - 1
CUGGUUAUAUAUGCAUAAUUAUUUGGAUUAGCUCG-CUAGUUCAUGAUGGCCAGUUCCGGGAAUCAUGCCUUUGAUUCAUCUGCUUUGGACUCCAGCAUCAAUGUUACCAA
.((((.((((((((.........((((((((....-))))))))...(((((((..(.((((((((......)))))).)).)..))))...)))))))..)))).)))). ( -29.20)
>consensus
CUGGUUAUAU_UGCAUAAUUAUUUGGAUUAGCUCG_CUAGUUCAUGAUGGCCAGUUCCGGGAAUCAUGCCUUUGAUUCAUCUGCUUUGGACUCCA________________
((((((((...............((((((((.....))))))))..)))))))).(((((((((((......)))))).......)))))..................... (-20.67 = -20.01 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:32 2006