| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,542,146 – 16,542,243 |
| Length | 97 |
| Max. P | 0.989319 |
| Location | 16,542,146 – 16,542,243 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 95.21 |
| Mean single sequence MFE | -23.03 |
| Consensus MFE | -22.19 |
| Energy contribution | -21.97 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.04 |
| Mean z-score | -3.04 |
| Structure conservation index | 0.96 |
| SVM decision value | 2.16 |
| SVM RNA-class probability | 0.989319 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16542146 97 - 20766785 ACAUAUAUGUAGAUGCAAAAGUAUCUGAAUAUGCAGUUUUAUACGUAUCUGAACAAUGCAUUUGGGA-AUGCAAAGAAGAAAGGAAUUGCGUGUUAAA .........(((((((....)))))))(((((((((((((....((......))..((((((....)-))))).........)))))))))))))... ( -23.70) >DroSec_CAF1 9120 96 - 1 --AUAUAUGUAGAUGCAAAAGUAUCUGAACAUGCAGUUUUAUACGUAUCUGAACAAUGCAAUUGGGAAAUGCAAGGAAGGAAGGAAUUGCGUGUUAAA --.......(((((((....)))))))(((((((((((((....((......))..((((.((....)))))).........)))))))))))))... ( -22.70) >DroSim_CAF1 9126 96 - 1 --AUAUAUGUAGAUGCAAAAGUAUCUGAACAUGCAGUUUUAUACGUAUCUGAACAAUGCAAUUGGGAAAUGCAAGGAAGGAAGGAAUUGCGUGUUAAA --.......(((((((....)))))))(((((((((((((....((......))..((((.((....)))))).........)))))))))))))... ( -22.70) >consensus __AUAUAUGUAGAUGCAAAAGUAUCUGAACAUGCAGUUUUAUACGUAUCUGAACAAUGCAAUUGGGAAAUGCAAGGAAGGAAGGAAUUGCGUGUUAAA .........(((((((....)))))))(((((((((((((....((......))..((((.........)))).........)))))))))))))... (-22.19 = -21.97 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:15 2006