Locus 5086

Sequence ID 2R_DroMel_CAF1
Location 16,520,515 – 16,520,635
Length 120
Max. P 0.616389
window8130

overview

Window 0

Location 16,520,515 – 16,520,635
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.72
Mean single sequence MFE -43.57
Consensus MFE -28.63
Energy contribution -29.25
Covariance contribution 0.62
Combinations/Pair 1.41
Mean z-score -1.51
Structure conservation index 0.66
SVM decision value 0.17
SVM RNA-class probability 0.616389
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16520515 120 + 20766785
UCCCUUGGCCAGUAUCAAGAUCAUGUGGCCCCGCUCCGAAGAGGAGAAGCAAAGGGGACGCAAUUGCGGCUUUGUGGCCUACAUGAGCCGCAAGGAUGCGGAAAGGGCCCUAAAGACACU
.(((((..((.(((((.......((((.((((.((((.....)))).......)))).)))).(((((((.(..((.....))..)))))))).))))))).)))))............. ( -48.10)
>DroVir_CAF1 3052 120 + 1
UCCGCUAGCCAGCAUCAAGAUCAUGUGGCCACGUUCUGAGGAAGAAAAGCAACGUGGCCGAAAUUGUGGCUUUGUAGCAUACAUGAGCCGCAAGGACGCCGAGCGGGCGCUACGCACUCU
.(((((.....((.((.........((((((((((((..........)).))))))))))...(((((((((((((...)))).))))))))).)).))..)))))(((...)))..... ( -44.00)
>DroGri_CAF1 3287 120 + 1
UCCGCUGGCAAGCAUCAAAAUCAUGUGGCCCCGCUCCGAGGAGGAGAAGCAACGUGGUCGCAAUUGUGGCUUCGUGGCGUACAUGAGCCGCAAAGAUGCCGAGCGUGCACUGCGCACCCU
...(((.(...(((((.......(((((((.((((((.....))))......)).))))))).((((((((.((((.....)))))))))))).)))))).)))((((.....))))... ( -48.70)
>DroWil_CAF1 2963 120 + 1
UCCGCUGGCCAGCAUUAAGAUUAUGUGGCCCCGUUCCGAGGAGGAGAAACAACGUGGACGUAAUUGUGGUUUUGUGGCCUACAUGAGUCGCAAGGAUGCUGAGCGAGCACUAAGAACGCU
...(((.(((((((((....((((((((((.(..(((.....)))(((((.(((..........))).)))))).)))).))))))..(....)))))))).)).)))............ ( -39.40)
>DroMoj_CAF1 3500 120 + 1
UCCACUGGCAAGCAUUAAGAUCAUGUGGCCACGCUCUGAGGAAGAGAAGCAGCGUGGCCGCAAUUGUGGAUUUGUGGCGUACAUGAGUCGCAAAGAUGCUGAGCGCGCGCUGAGGACUCU
(((.......((((((.......((((((((((((((..........)).)))))))))))).(((((.(((..((.....))..)))))))).)))))).(((....)))..))).... ( -45.80)
>DroAna_CAF1 3101 120 + 1
UCCUCUAGCUAGUAUAAAGAUAAUGUGGCCCCGGUCGGAAGAGGAAAAGCAGAGGGGUCGGAAUUGUGGAUUCGUAGCUUACAUGAGUCGCAAGGAUGCCGAAAGAGCGCUCCGGGCUCU
((((((.((((.(((....)))...)))).((....)).)))))).......((((.(((((.(((((.((((((.......)))))))))))....(((....).))..))))).)))) ( -35.40)
>consensus
UCCGCUGGCCAGCAUCAAGAUCAUGUGGCCCCGCUCCGAGGAGGAGAAGCAACGUGGACGCAAUUGUGGCUUUGUGGCCUACAUGAGCCGCAAGGAUGCCGAGCGAGCGCUAAGGACUCU
.......(((.(((((.......((((((((((((((.....))))......)))))))))).((((((((.((((.....)))))))))))).)))))......)))............ (-28.63 = -29.25 +   0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:09 2006