Locus 5084

Sequence ID 2R_DroMel_CAF1
Location 16,518,024 – 16,518,134
Length 110
Max. P 0.912266
window8128

overview

Window 8

Location 16,518,024 – 16,518,134
Length 110
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 77.95
Mean single sequence MFE -35.20
Consensus MFE -18.00
Energy contribution -16.70
Covariance contribution -1.30
Combinations/Pair 1.50
Mean z-score -2.37
Structure conservation index 0.51
SVM decision value 1.08
SVM RNA-class probability 0.912266
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16518024 110 - 20766785
CACCA----------CAGUUUUGCCACGGAGUACCACAUGCAGGUCCAUAUCAGCAUGCAGCACCGCAAGGCGGCCAAUAUCUGCCAUGUGUGCGGCAAGAAGAUCAAGGACAAGGCUGU
....(----------((((((((((..(((...((.......)))))..(((..(.(((.((((.(((.(((((.......))))).))))))).))).)..)))...)).))))))))) ( -36.40)
>DroVir_CAF1 200 105 - 1
---------------CAGCUUUGCCACCGAGUACCACAUGCAGGUUCACAUAAGUAUGCAGCACCGCAAGGCAGCCAACGUGUGCCAUGUGUGCGGCAAAGAAAUCAAGGAUAAGGCUGU
---------------(((((((((((((..(((.....))).)))...........(((.((((.(((.((((((....)).)))).))))))).)))..........)).)))))))). ( -32.40)
>DroGri_CAF1 513 105 - 1
---------------CAGCUUUGCUACAGAAUAUCACAUGCAGGUGCAUGUUAGCAUGCAGCAUCGGAAGGCGGCAAAUGUGUGUCAUGUAUGUGGCAAGGAAAUCAAGGACAAGGCGGU
---------------...((((((((((..((((.(((((((..((((((....))))))((.((....))..))...))))))).)))).))))))))))................... ( -35.00)
>DroWil_CAF1 284 106 - 1
----G----------UAGCUUUGCGACCGAGUAUCAUAUGCAGGUCCACAUAAGCAUGCAGCAUCGGAAAGCGGCCAAUGUCUGUCAUGUUUGUGGUAAAAAGAUUAAGGAUAAAGCUGU
----.----------(((((((((((((..((((...)))).))))..((((((((((((((((.((.......)).))).))).))))))))))..............).)))))))). ( -33.70)
>DroMoj_CAF1 572 110 - 1
AUCAA----------UAGCUUUGCCACCGAGUACCACAUGCAGGUGCACAUUAGCAUGCAGCACCGAAAGGCGGCCAAUGUGUGUCAUGUGUGCGGUAAGGAGAUCAAGGAUAAGGCUGU
....(----------((((((((((.((...((((.((((((((..((((((.((......(.((....)).))).))))))..)).)))))).)))).)).......)).))))))))) ( -39.00)
>DroAna_CAF1 574 120 - 1
AACCAUAUUUUCCUUCAGUUUUGCCACAGAGUACCAUAUGCAAGUCCACAUCAGCAUGCAACACCGCAAAGCGGCCAAUAUAUGCCACGUCUGUGGCAAGAAAAUUAAAGAUAAGGCUGU
..((.((((((.......((((((((((((((..((((((((.((........)).)))....((((...)))).....)))))..)).))))))))))))......)))))).)).... ( -34.72)
>consensus
____A__________CAGCUUUGCCACCGAGUACCACAUGCAGGUCCACAUAAGCAUGCAGCACCGCAAGGCGGCCAAUGUGUGCCAUGUGUGCGGCAAGAAAAUCAAGGAUAAGGCUGU
...............((((((((((............((((..((....))..))))((.((((((...((((.........)))).)).)))).))...........)).)))))))). (-18.00 = -16.70 +  -1.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:07 2006