| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,500,551 – 16,500,667 |
| Length | 116 |
| Max. P | 0.667895 |
| Location | 16,500,551 – 16,500,667 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 81.14 |
| Mean single sequence MFE | -39.06 |
| Consensus MFE | -29.71 |
| Energy contribution | -28.75 |
| Covariance contribution | -0.96 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.667895 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16500551 116 - 20766785 GAUCCAACUGGACUGCGACAAGAAGCGCAACUGCCUGGACACU---UCGGAGGAGUUGCGCGACCAAGCGCAGGCCACUUGGCAAAGAAUCCAGACCAUGCGCUCCAUUAACGCCAGUU .......((((((((((.......((((((((.((((((...)---)))).).)))))))).......)))))(((....)))......))))).....(((.........)))..... ( -41.34) >DroSec_CAF1 636 116 - 1 GAUUCAGCUGGACUGCGACAAGAAGCGCAACUGCCUGGACACU---UCGGAUGAGUUGCGCGACCAAGCGCAGGCGACUUGGCAGAGAAUCCAGACCAUGCGCUCCAUCAACACCAGUU .....((((((.(((((.......((((((((..(((((...)---))))...)))))))).......)))))(((...((((..........).)))..)))..........)))))) ( -37.94) >DroEre_CAF1 948 116 - 1 AAUUCAGCUGGACUGCGACAAGAAGCGCAACUCCCUAGACACU---UCGGAGGAGUUGCGCGACCAAGCGCAGGCCACUUGGCAGAGGAUCCAGACCAUGCGCUCCAUAAACGCCAGCC ......(((((.(((((.......((((((((((((.((....---)))).)))))))))).......)))))(((....)))...(((.(((.....)).).))).......))))). ( -45.94) >DroYak_CAF1 644 116 - 1 GAUACAGCUGGACUGCGACAAGAAGCGCAACUGCCUGGACACA---UCCGAGGAGUUGCGUGACCAAGCGCAGGCCACUUGGCAGAGGAUCCAGACCAUGCGCUCCAUAAAUGCCAGCC ......(((((.(((((.......((((((((.((((((....---))).))))))))))).......)))))(((....)))...(((.(((.....)).).))).......))))). ( -44.94) >DroAna_CAF1 634 116 - 1 UAUUCAGCUGGACUGUGACAAGAAGCGAAACUGCCUGGACACC---UCGGAGGAGCUUCGCAACCAGGCACAGGCCGCCUGGCAACGGGUACAGACAAUGCGUUCUAUUAACUCCACUC ......((.((.(((((....(..(((((.((.(((((.....---)))).).)).)))))..)....))))).))(((((....))))).........)).................. ( -32.90) >DroPer_CAF1 1843 119 - 1 CAUCCAGUUGGACUUGGAGAAGAAGCGCAAUUCUCUGGAUAAUUUCUCCGAGGCACUGUGUAAUCAGGCCCAGGCUACCUGGCAACGAGUUCAGACUAUGUGCUCCAUCAACACCAGUC ..(((((......)))))((.(.((((((....(((((((.......((..(((.(((......))))))..)).....((....)).)))))))...)))))).).)).......... ( -31.30) >consensus GAUUCAGCUGGACUGCGACAAGAAGCGCAACUGCCUGGACACU___UCGGAGGAGUUGCGCGACCAAGCGCAGGCCACUUGGCAAAGAAUCCAGACCAUGCGCUCCAUAAACGCCAGUC ......(((((.(((((.......((((((((.(((..............))))))))))).......)))))(((....)))..............................))))). (-29.71 = -28.75 + -0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:56 2006