Locus 5077

Sequence ID 2R_DroMel_CAF1
Location 16,498,967 – 16,499,077
Length 110
Max. P 0.554865
window8116

overview

Window 6

Location 16,498,967 – 16,499,077
Length 110
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 86.18
Mean single sequence MFE -24.22
Consensus MFE -17.50
Energy contribution -18.10
Covariance contribution 0.60
Combinations/Pair 1.23
Mean z-score -1.63
Structure conservation index 0.72
SVM decision value 0.04
SVM RNA-class probability 0.554865
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16498967 110 - 20766785
CUGCUCGGCGAAUUUGAAGAUCUGGACAGAUUUUUGGGUUCAAAAGGAUAUUAAGUCAGUGAAUGGGAUUUAAUAUUCAUACUGCAUGGGCUAUAAGAGAAUUAAUGUCG
..((((((((((((..(((((((....)))))))..)))))....((((((((((((.........)))))))))))).....)).)))))................... ( -33.20)
>DroSec_CAF1 9481 103 - 1
CUGCUCUGCGAAUUUGAAGAUCUGGACAGAUUUUUGGGUUAAAAAGGAUAUAAAGUCAGUGAAUGGGAUUUAAUAU-CAUACUGCAUGGACUAUAAGAAAAUUG------
...((.((((((((..(((((((....)))))))..))))......(((((.(((((.........))))).))))-)....)))).))...............------ ( -20.90)
>DroSim_CAF1 9592 110 - 1
CUGCUCUGCGAAUUUGAAGAUCUGGACAGAUUUUUGGGUUAAAAAGGAUAUAAAGUCAGUGAAUGGGAUUUAAUAUUCAUACUGCAUGGACUAUAAGAGAAUUUAUGUCG
.....((...((((..(((((((....)))))))..))))....))((((((((.((.(((((((........))))))).((....)).........)).)))))))). ( -23.50)
>DroEre_CAF1 9767 110 - 1
UUGCUUGCAAAAUUUGAAGAUCUGGACAGAUUUUUGGGUUAAAAAGGCUAUUAAGUCUGUAAAUGGGAUUUAAUAUUCAUAUUGAAUGGACUAUAAAAGAAUUAAUGUCG
..((((....((((..(((((((....)))))))..))))....))))((((((.(((....((((.((((((((....))))))))...))))...))).))))))... ( -23.80)
>DroYak_CAF1 9329 110 - 1
UUGCUUGGAAAAUUUGAGUAUUUGGACGGAUUUUUGGGUUAAAAAGACUAUUAAGUCUGUAAAUGUGAUUUAAUAUUCAUAAUGAAUGGACUAUAAGAACAUUAAUGUCG
.((((..((...))..)))).....((((((((...((((.....))))...)))))))).(((((..((...(((((.....)))))......))..)))))....... ( -19.70)
>consensus
CUGCUCGGCGAAUUUGAAGAUCUGGACAGAUUUUUGGGUUAAAAAGGAUAUUAAGUCAGUGAAUGGGAUUUAAUAUUCAUACUGCAUGGACUAUAAGAGAAUUAAUGUCG
...(((....((((..(((((((....)))))))..)))).....((((((((((((.........))))))))))))..................)))........... (-17.50 = -18.10 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:55 2006