Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 16,482,059 – 16,482,151 |
Length | 92 |
Max. P | 0.607827 |
Location | 16,482,059 – 16,482,151 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 79.52 |
Mean single sequence MFE | -22.06 |
Consensus MFE | -14.68 |
Energy contribution | -14.23 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.32 |
Mean z-score | -1.34 |
Structure conservation index | 0.67 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.607827 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16482059 92 + 20766785 AAUUUGUUUUCAUGGCAGACGGAACUAAGUACGCAUGGGUAU------AAGAGAAACCAAAGGUUACUGCCAUU--UGCCACUGAGCAAACUGA-----------------AAUAAA ..(((((((...(((((((.((.....((((.((...(((..------.......)))....)))))).)).))--)))))..)))))))....-----------------...... ( -22.10) >DroSec_CAF1 157128 92 + 1 AAUUGGUUUUCAUGGCAGACGGAACUAAGUACGCAUGGGUAU------AAGGGAAACCAAAGGUUACUGCCAUU--UGCCGCAGAGCAAACUUA-----------------AAUAAA ....(((....(((((((....((((..((((......))))------..((....))...)))).))))))).--.)))..............-----------------...... ( -22.70) >DroSim_CAF1 154632 92 + 1 AAUUGGUUUUCAUGGCAGACGGAACUAAGUACGCAUGGGUAU------AAGGGAAACCAAAGGUUACUGCCAUU--UGCCGCAGAGCAAACUUA-----------------AAUAAA ....(((....(((((((....((((..((((......))))------..((....))...)))).))))))).--.)))..............-----------------...... ( -22.70) >DroEre_CAF1 158877 94 + 1 AAUUGGUUUUCGUGGCAGACGGAACUAAGUACGCAUGGGUAU------CUGU-GAGUUAAAGGUUACUGCCAUU--UGCCGCAGAGCAAACUGAAA--------------AAAUGAA ..(..(((((((((((((((((((((....((.(((((....------))))-).))....)))).)))...))--)))))).))..))))..)..--------------....... ( -23.70) >DroYak_CAF1 159590 99 + 1 AAUUGGUUUUCAUGGCAGACGGAACUAAGUACGCAUGGGUAUACUCGUAUGU-UAGCCAAAGGUUACUGCCAUUUUUGCCGCAGAGCAAACUGA-----------------AAUGAA ....(((....(((((((............(((.(((((....))))).)))-(((((...))))))))))))....))).(((......))).-----------------...... ( -23.40) >DroAna_CAF1 155544 100 + 1 AAUUGGUUUUCAUGGCAGACGGAACUAAGUACGCAUAUU---------------UGCCAAAGGUUACUGCCAUU--UGCCGCGAAGUGAACACAAAAUAAACCCACAAUAAAAUAAA ....(((....(((((((....((((......(((....---------------)))....)))).))))))).--.))).....(((...............)))........... ( -17.76) >consensus AAUUGGUUUUCAUGGCAGACGGAACUAAGUACGCAUGGGUAU______AAGG_AAACCAAAGGUUACUGCCAUU__UGCCGCAGAGCAAACUGA_________________AAUAAA ...((((....(((((((......(((.(....).)))................((((...)))).)))))))....)))).................................... (-14.68 = -14.23 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:54 2006